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Orthologous genes in OrthoFinder**

Species Gene Description
 vvi-u.5   100251933   PHD finger protein ALFIN-LIKE 1 
 vvi-r.5   100251933   PHD finger protein ALFIN-LIKE 1 
 vvi-m.5   100251933   PHD finger protein ALFIN-LIKE 1 
 vvi-u.5   100247536   PHD finger protein ALFIN-LIKE 4 
 vvi-u.5   100263503   PHD finger protein ALFIN-LIKE 4 
 vvi-u.5   100852794   PHD finger protein ALFIN-LIKE 4 
 ath-u.5   AL4   alfin-like 4 
 ath-u.5   AL7   alfin-like 7 
 ath-u.5   AL5   alfin-like 5 
 gma-u.5   100777146   PHD finger superfamily protein 
 gma-u.5   100779170   PHD finger protein ALFIN-LIKE 1-like 
 ppo-u.5   7478178   PHD finger protein Alfin1 
 ppo-u.5   7487323   PHD finger protein ALFIN-LIKE 1 
 ppo-u.5   7476667   PHD finger protein ALFIN-LIKE 4 
 mtr-u.5   25498754   PHD finger protein ALFIN-LIKE 2 
 mtr-u.5   25494361   PHD finger protein Alfin1 
 mtr-u.5   11433421   PHD finger protein ALFIN-LIKE 4 
 sly-u.5   101259267   PHD finger protein ALFIN-LIKE 4 
 sly-u.5   101262577   PHD finger protein ALFIN-LIKE 2 
 sly-u.5   fin1   putative alfin-like transcription factor 
 osa-u.5   4337899   PHD finger protein ALFIN-LIKE 1-like 
 osa-u.5   4342784   PHD finger protein ALFIN-LIKE 2-like 
 osa-u.5   4335954   PHD finger protein ALFIN-LIKE 4-like 
 zma-u.5   100273857   uncharacterized LOC100273857 
 zma-u.5   100283842   uncharacterized LOC100283842 
 zma-u.5   100283100   uncharacterized LOC100283100 

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Top 50 coexpressed genes to 100251933 (vvi-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100251933 (vvi-u.5 coexpression data)

CoexMap"100251933"


vviLOC100251933 | Entrez gene ID : 100251933      
Species vvi ath gma ppo mtr sly osa zma bdi hvu bra cit bna sbi ghi sot nta cre tae
Paralog 6 3 2 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006355 [list] [network] regulation of DNA-templated transcription  (1359 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (2597 genes)  IEA  
GO MF
GO:0042393 [list] [network] histone binding  (43 genes)  IEA  
GO:0003712 [list] [network] transcription coregulator activity  (115 genes)  IEA  
GO:0000976 [list] [network] transcription cis-regulatory region binding  (319 genes)  IEA  
Protein XP_002270490.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  nucl 3,  chlo_mito 3  (predict for XP_002270490.2)
Subcellular
localization
TargetP
other 8  (predict for XP_002270490.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

vvi-u.5
for
100251933
vvi-r.5
for
100251933
vvi-m.5
for
100251933
vvi-u.5
for
100247536
vvi-u.5
for
100263503
vvi-u.5
for
100852794
ath-u.5
for
AL4
ath-u.5
for
AL7
ath-u.5
for
AL5
gma-u.5
for
100777146
gma-u.5
for
100779170
ppo-u.5
for
7478178
ppo-u.5
for
7487323
ppo-u.5
for
7476667
mtr-u.5
for
25498754
mtr-u.5
for
25494361
mtr-u.5
for
11433421
sly-u.5
for
101259267
sly-u.5
for
101262577
sly-u.5
for
fin1
osa-u.5
for
4337899
osa-u.5
for
4342784
osa-u.5
for
4335954
zma-u.5
for
100273857
zma-u.5
for
100283842
zma-u.5
for
100283100


Ortholog ID: 163
Species vvi vvi ath ath gma gma bra ppo ppo mtr mtr ghi ghi bna bna cit cit sly sly sot sot nta nta osa osa zma zma tae tae hvu hvu sbi sbi bdi bdi cre cre
Symbol LOC100251933 LOC100852794 AL3 AL2 LOC100794662 LOC100793126 LOC103827517 LOC7490325 LOC18109476 LOC25481987 LOC25494361 LOC107910658 LOC107905795 LOC106365444 LOC106348570 LOC102609956 LOC102612029 LOC101259267 LOC101264911 LOC102605058 LOC102599199 LOC107827993 LOC107795748 LOC4342784 LOC9269003 LOC100283422 LOC100216893 LOC123123460 LOC123187982 LOC123447832 LOC123426080 LOC8058123 LOC110433568 LOC100829192 LOC100830499 CHLRE_07g320950v5 CHLRE_07g357650v5
Function* PHD finger protein ALFIN-LIKE 1 PHD finger protein ALFIN-LIKE 4 alfin-like 3 alfin-like 2 PHD finger protein ALFIN-LIKE 5-like PHD finger protein ALFIN-LIKE 1-like PHD finger protein ALFIN-LIKE 6 PHD finger protein ALFIN-LIKE 2 PHD finger protein Alfin1 PHD finger protein ALFIN-LIKE 4 PHD finger protein Alfin1 PHD finger protein ALFIN-LIKE 7 PHD finger protein ALFIN-LIKE 7 PHD finger protein ALFIN-LIKE 6 PHD finger protein ALFIN-LIKE 4 PHD finger protein ALFIN-LIKE 4 PHD finger protein ALFIN-LIKE 7 PHD finger protein ALFIN-LIKE 4 PHD finger protein ALFIN-LIKE 4 PHD finger protein ALFIN-LIKE 1-like PHD finger protein ALFIN-LIKE 2 PHD finger protein ALFIN-LIKE 5-like PHD finger protein ALFIN-LIKE 1 PHD finger protein ALFIN-LIKE 2-like PHD finger protein ALFIN-LIKE 7-like uncharacterized LOC100283422 ALFIN-like transcription factor PHD finger protein ALFIN-LIKE 3 PHD finger protein ALFIN-LIKE 9 PHD finger protein ALFIN-LIKE 8 PHD finger protein ALFIN-LIKE 2 PHD finger protein ALFIN-LIKE 8 PHD finger protein ALFIN-LIKE 6 PHD finger protein ALFIN-LIKE 1 PHD finger protein ALFIN-LIKE 6 uncharacterized protein uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04144 Endocytosis 3
ath04141 Protein processing in endoplasmic reticulum 3
ath03050 Proteasome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03015 mRNA surveillance pathway 4
gma03040 Spliceosome 3
gma04382 Cornified envelope formation 2
gma03050 Proteasome 2
gma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00190 Oxidative phosphorylation 6
gma00020 Citrate cycle (TCA cycle) 3
gma01200 Carbon metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04130 SNARE interactions in vesicular transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03082 ATP-dependent chromatin remodeling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 2
mtr04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04016 MAPK signaling pathway - plant 4
sot04070 Phosphatidylinositol signaling system 4
sot04075 Plant hormone signal transduction 4
sot04626 Plant-pathogen interaction 4
sot04144 Endocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00564 Glycerophospholipid metabolism 2
sot03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03013 Nucleocytoplasmic transport 2
osa03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03250 Viral life cycle - HIV-1 3
tae03272 Virion - Hepatitis viruses 3
tae04144 Endocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 4
tae00010 Glycolysis / Gluconeogenesis 3
tae00051 Fructose and mannose metabolism 3
tae00052 Galactose metabolism 3
tae00500 Starch and sucrose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03420 Nucleotide excision repair 3
sbi04141 Protein processing in endoplasmic reticulum 3
sbi04120 Ubiquitin mediated proteolysis 3
sbi03020 RNA polymerase 2
sbi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03050 Proteasome 10
bdi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 2
cre03015 mRNA surveillance pathway 2
cre03082 ATP-dependent chromatin remodeling 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100251933 100852794 823316 820290 100794662 100793126 103827517 7490325 18109476 25481987 25494361 107910658 107905795 106365444 106348570 102609956 102612029 101259267 101264911 102605058 102599199 107827993 107795748 4342784 9269003 100283422 100216893 123123460 123187982 123447832 123426080 8058123 110433568 100829192 100830499 5726584 5729202
The preparation time of this page was 2.8 [sec].