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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_12g502350v5   uncharacterized protein 
 ath-u.5   RECQL2   RECQ helicase L2 
 gma-u.5   100817635   ATP-dependent DNA helicase Q-like 2 
 sly-u.5   101268017   ATP-dependent DNA helicase Q-like 2 
 osa-u.5   4351234   ATP-dependent DNA helicase Q-like 2 
 zma-u.5   100382802   Mediator of RNA polymerase II transcription subunit 34 
 bra-r.6   103833810   mediator of RNA polymerase II transcription subunit 34 
 vvi-u.5   100256266   ATP-dependent DNA helicase Q-like 2 
 ppo-u.5   7491914   ATP-dependent DNA helicase Q-like 2 
 mtr-u.5   11409950   ATP-dependent DNA helicase Q-like 2 
 tae-r.2   123096715   ATP-dependent DNA helicase Q-like 2 
 tae-r.2   123091731   ATP-dependent DNA helicase Q-like 2 
 tae-r.2   123086299   ATP-dependent DNA helicase Q-like 2 
 hvu-r.1   123448118   ATP-dependent DNA helicase Q-like 2 
 ghi-r.1   107909120   ATP-dependent DNA helicase Q-like 2 
 ghi-r.1   107928239   ATP-dependent DNA helicase Q-like 2 
 bna-r.1   106397225   ATP-dependent DNA helicase Q-like 2 
 bna-r.1   106416161   ATP-dependent DNA helicase Q-like 2 
 sbi-r.1   8083623   mediator of RNA polymerase II transcription subunit 34 
 sot-r.1   102593600   mediator of RNA polymerase II transcription subunit 34-like 
 cit-r.1   102630216   ATP-dependent DNA helicase Q-like 2 
 bdi-r.1   100837005   mediator of RNA polymerase II transcription subunit 34 
 nta-r.1   107814520   ATP-dependent DNA helicase Q-like 2 
 nta-r.1   107815379   ATP-dependent DNA helicase Q-like 2 

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Top 50 coexpressed genes to CHLRE_12g502350v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_12g502350v5 (cre-r.1 coexpression data)

CoexMap"5716410"


creCHLRE_12g502350v5 | Entrez gene ID : 5716410    
Species cre ath gma sly osa zma bra vvi ppo mtr tae hvu ghi bna sbi sot cit bdi nta
Paralog 1 1 1 1 1 1 1 1 1 1 3 1 2 2 1 1 1 1 2
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0000724 [list] [network] double-strand break repair via homologous recombination  (82 genes)  IEA  
GO CC
GO:0016592 [list] [network] mediator complex  (16 genes)  IEA  
GO:0005694 [list] [network] chromosome  (334 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (2907 genes)  IEA  
GO MF
GO:0009378 [list] [network] four-way junction helicase activity  (7 genes)  IEA  
GO:0043138 [list] [network] 3'-5' DNA helicase activity  (16 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (1223 genes)  IEA  
GO:0003676 [list] [network] nucleic acid binding  (1484 genes)  IEA  
Protein XP_042918258.1 [sequence] [blastp]
Subcellular
localization
wolf
plas 4,  nucl 2,  E.R._plas 2,  cyto 1,  pero 1,  cyto_pero 1  (predict for XP_042918258.1)
Subcellular
localization
TargetP
other 9  (predict for XP_042918258.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_12g502350v5
ath-u.5
for
RECQL2
gma-u.5
for
100817635
sly-u.5
for
101268017
osa-u.5
for
4351234
zma-u.5
for
100382802
bra-r.6
for
103833810
vvi-u.5
for
100256266
ppo-u.5
for
7491914
mtr-u.5
for
11409950
tae-r.2
for
123096715
tae-r.2
for
123091731
tae-r.2
for
123086299
hvu-r.1
for
123448118
ghi-r.1
for
107909120
ghi-r.1
for
107928239
bna-r.1
for
106397225
bna-r.1
for
106416161
sbi-r.1
for
8083623
sot-r.1
for
102593600
cit-r.1
for
102630216
bdi-r.1
for
100837005
nta-r.1
for
107814520
nta-r.1
for
107815379


Ortholog ID: 10495
Species cre ath gma sly osa zma bra vvi ppo mtr tae tae tae hvu ghi ghi bna bna sbi sot cit bdi nta nta
Symbol CHLRE_12g502350v5 RECQL2 LOC100817635 LOC101268017 LOC4351234 LOC100382802 LOC103833810 LOC100256266 LOC7491914 LOC11409950 LOC123096715 LOC123091731 LOC123086299 LOC123448118 LOC107909120 LOC107928239 LOC106397225 LOC106416161 LOC8083623 LOC102593600 LOC102630216 LOC100837005 LOC107814520 LOC107815379
Function* uncharacterized protein RECQ helicase L2 ATP-dependent DNA helicase Q-like 2 ATP-dependent DNA helicase Q-like 2 ATP-dependent DNA helicase Q-like 2 Mediator of RNA polymerase II transcription subunit 34 mediator of RNA polymerase II transcription subunit 34 ATP-dependent DNA helicase Q-like 2 ATP-dependent DNA helicase Q-like 2 ATP-dependent DNA helicase Q-like 2 ATP-dependent DNA helicase Q-like 2 ATP-dependent DNA helicase Q-like 2 ATP-dependent DNA helicase Q-like 2 ATP-dependent DNA helicase Q-like 2 ATP-dependent DNA helicase Q-like 2 ATP-dependent DNA helicase Q-like 2 ATP-dependent DNA helicase Q-like 2 ATP-dependent DNA helicase Q-like 2 mediator of RNA polymerase II transcription subunit 34 mediator of RNA polymerase II transcription subunit 34-like ATP-dependent DNA helicase Q-like 2 mediator of RNA polymerase II transcription subunit 34 ATP-dependent DNA helicase Q-like 2 ATP-dependent DNA helicase Q-like 2
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 2
gma00510 N-Glycan biosynthesis 2
gma00513 Various types of N-glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03460 Fanconi anemia pathway 2
sly03013 Nucleocytoplasmic transport 2
sly04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 6
tae03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 3
tae03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 6
tae03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03460 Fanconi anemia pathway 2
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03460 Fanconi anemia pathway 2
ghi03018 RNA degradation 2
ghi03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03013 Nucleocytoplasmic transport 3
bna03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03013 Nucleocytoplasmic transport 3
bna03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04075 Plant hormone signal transduction 2
nta03015 mRNA surveillance pathway 2
nta00780 Biotin metabolism 2
nta01240 Biosynthesis of cofactors 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 5716410 840026 100817635 101268017 4351234 100382802 103833810 100256266 7491914 11409950 123096715 123091731 123086299 123448118 107909120 107928239 106397225 106416161 8083623 102593600 102630216 100837005 107814520 107815379
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