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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.str   UBP3   ubiquitin-specific protease 3 
 ath-u.5   UBP3   ubiquitin-specific protease 3 
 ath-r.7   UBP3   ubiquitin-specific protease 3 
 ath-m.9   UBP3   ubiquitin-specific protease 3 
 ath-e.2   UBP3   ubiquitin-specific protease 3 
 ath-m.4.bio   UBP3   ubiquitin-specific protease 3 
 ath-m.4.hor   UBP3   ubiquitin-specific protease 3 
 ath-m.4.lig   UBP3   ubiquitin-specific protease 3 
 ath-m.4.tis   UBP3   ubiquitin-specific protease 3 
 ath-u.5   UBP4   ubiquitin-specific protease 4 
 bra-r.6   103853712   ubiquitin carboxyl-terminal hydrolase 3 
 bra-r.6   103837901   ubiquitin carboxyl-terminal hydrolase 3 
 bna-r.1   106361373   ubiquitin carboxyl-terminal hydrolase 3 
 bna-r.1   106368704   ubiquitin carboxyl-terminal hydrolase 4-like 
 bna-r.1   106377440   ubiquitin carboxyl-terminal hydrolase 3 
 ghi-r.1   107950458   ubiquitin carboxyl-terminal hydrolase 3 
 ghi-r.1   107951861   ubiquitin carboxyl-terminal hydrolase 3 
 ghi-r.1   107945449   ubiquitin carboxyl-terminal hydrolase 3 
 cit-r.1   102622180   ubiquitin carboxyl-terminal hydrolase 4 
 gma-u.5   100305765   ubiquitin-specific protease 
 gma-u.5   100787737   ubiquitin carboxyl-terminal hydrolase 4 
 gma-u.5   100794462   ubiquitin carboxyl-terminal hydrolase 4 
 vvi-u.5   100253110   ubiquitin carboxyl-terminal hydrolase 3 
 vvi-u.5   100253333   ubiquitin carboxyl-terminal hydrolase 4 
 ppo-u.5   7471503   ubiquitin carboxyl-terminal hydrolase 4 
 ppo-u.5   7490209   ubiquitin carboxyl-terminal hydrolase 4 
 mtr-u.5   11415028   ubiquitin carboxyl-terminal hydrolase 4 
 mtr-u.5   25501908   ubiquitin carboxyl-terminal hydrolase 4 
 sly-u.5   101250454   ubiquitin carboxyl-terminal hydrolase 4 
 sly-u.5   101257760   ubiquitin carboxyl-terminal hydrolase 4 
 sot-r.1   102582326   ubiquitin carboxyl-terminal hydrolase 3 
 sot-r.1   102579768   ubiquitin carboxyl-terminal hydrolase 3-like 
 nta-r.1   107776464   ubiquitin carboxyl-terminal hydrolase 3 
 nta-r.1   107787000   ubiquitin carboxyl-terminal hydrolase 3-like 
 nta-r.1   107804851   ubiquitin carboxyl-terminal hydrolase 3 
 osa-u.5   4336009   ubiquitin carboxyl-terminal hydrolase 4 
 osa-u.5   4331901   ubiquitin carboxyl-terminal hydrolase 3 
 osa-u.5   4329740   ubiquitin carboxyl-terminal hydrolase 4 
 zma-u.5   100304268   putative ubiquitin carboxyl-terminal hydrolase superfamily protein 
 zma-u.5   100280339   putative ubiquitin carboxyl-terminal hydrolase superfamily protein 
 zma-u.5   100274352   uncharacterized LOC100274352 
 tae-r.2   123127531   ubiquitin carboxyl-terminal hydrolase 4 
 tae-r.2   123045626   ubiquitin carboxyl-terminal hydrolase 4 
 tae-r.2   123053474   ubiquitin carboxyl-terminal hydrolase 4 
 hvu-r.1   123426880   ubiquitin carboxyl-terminal hydrolase 4-like 
 hvu-r.1   123402891   ubiquitin carboxyl-terminal hydrolase 4-like 
 hvu-r.1   123449674   ubiquitin carboxyl-terminal hydrolase 3-like 
 sbi-r.1   8072619   ubiquitin carboxyl-terminal hydrolase 3 
 sbi-r.1   8081912   ubiquitin carboxyl-terminal hydrolase 3 
 sbi-r.1   8057450   ubiquitin carboxyl-terminal hydrolase 4 
 bdi-r.1   100839657   ubiquitin carboxyl-terminal hydrolase 4 
 bdi-r.1   100846646   ubiquitin carboxyl-terminal hydrolase 3 
 bdi-r.1   104583789   ubiquitin carboxyl-terminal hydrolase 4 
 cre-r.1   CHLRE_06g250750v5   uncharacterized protein 

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Top 50 coexpressed genes to UBP3 (ath-m.4.str coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to UBP3 (ath-m.4.str coexpression data)

CoexMap"830150"


athUBP3 | Entrez gene ID : 830150    
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 10 2 3 3 1 3 2 2 2 2 2 3 3 3 3 3 3 3 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  IDA  
GO:0005737 [list] [network] cytoplasm  (14000 genes)  ISM  
GO MF
GO:0004843 [list] [network] cysteine-type deubiquitinase activity  (39 genes)  IDA  
Protein NP_568074.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9,  cyto 1  (predict for NP_568074.1)
Subcellular
localization
TargetP
other 9  (predict for NP_568074.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.str
for
UBP3
ath-u.5
for
UBP3
ath-r.7
for
UBP3
ath-m.9
for
UBP3
ath-e.2
for
UBP3
ath-m.4.bio
for
UBP3
ath-m.4.hor
for
UBP3
ath-m.4.lig
for
UBP3
ath-m.4.tis
for
UBP3
ath-u.5
for
UBP4
bra-r.6
for
103853712
bra-r.6
for
103837901
bna-r.1
for
106361373
bna-r.1
for
106368704
bna-r.1
for
106377440
ghi-r.1
for
107950458
ghi-r.1
for
107951861
ghi-r.1
for
107945449
cit-r.1
for
102622180
gma-u.5
for
100305765
gma-u.5
for
100787737
gma-u.5
for
100794462
vvi-u.5
for
100253110
vvi-u.5
for
100253333
ppo-u.5
for
7471503
ppo-u.5
for
7490209
mtr-u.5
for
11415028
mtr-u.5
for
25501908
sly-u.5
for
101250454
sly-u.5
for
101257760
sot-r.1
for
102582326
sot-r.1
for
102579768
nta-r.1
for
107776464
nta-r.1
for
107787000
nta-r.1
for
107804851
osa-u.5
for
4336009
osa-u.5
for
4331901
osa-u.5
for
4329740
zma-u.5
for
100304268
zma-u.5
for
100280339
zma-u.5
for
100274352
tae-r.2
for
123127531
tae-r.2
for
123045626
tae-r.2
for
123053474
hvu-r.1
for
123426880
hvu-r.1
for
123402891
hvu-r.1
for
123449674
sbi-r.1
for
8072619
sbi-r.1
for
8081912
sbi-r.1
for
8057450
bdi-r.1
for
100839657
bdi-r.1
for
100846646
bdi-r.1
for
104583789
cre-r.1
for
CHLRE_06g250750v5


Ortholog ID: 2384
Species ath ath bra bra bna bna bna ghi ghi ghi cit gma gma gma vvi vvi ppo ppo mtr mtr sly sly sot sot nta nta nta osa osa osa zma zma zma tae tae tae hvu hvu hvu sbi sbi sbi bdi bdi bdi cre
Symbol UBP3 UBP4 LOC103853712 LOC103837901 LOC106361373 LOC106368704 LOC106382597 LOC107950458 LOC107937234 LOC107942528 LOC102622180 LOC100787737 LOC100794462 LOC100812627 LOC100253110 LOC100253333 LOC7471503 LOC7490209 LOC11415028 LOC25501908 LOC101250454 LOC101257760 LOC102582326 LOC102579768 LOC107776464 LOC107804851 LOC107806258 LOC4336009 LOC4331901 LOC4329740 LOC100304268 LOC100280339 LOC100274352 LOC123165815 LOC123098734 LOC123139208 LOC123426880 LOC123402891 LOC123449674 LOC8072619 LOC8081912 LOC8057450 LOC100839657 LOC100846646 LOC104583789 CHLRE_06g250750v5
Function* ubiquitin-specific protease 3 ubiquitin-specific protease 4 ubiquitin carboxyl-terminal hydrolase 3 ubiquitin carboxyl-terminal hydrolase 3 ubiquitin carboxyl-terminal hydrolase 3 ubiquitin carboxyl-terminal hydrolase 4-like ubiquitin carboxyl-terminal hydrolase 3 ubiquitin carboxyl-terminal hydrolase 3 ubiquitin carboxyl-terminal hydrolase 3 ubiquitin carboxyl-terminal hydrolase 3 ubiquitin carboxyl-terminal hydrolase 4 ubiquitin carboxyl-terminal hydrolase 4 ubiquitin carboxyl-terminal hydrolase 4 ubiquitin carboxyl-terminal hydrolase 4 ubiquitin carboxyl-terminal hydrolase 3 ubiquitin carboxyl-terminal hydrolase 4 ubiquitin carboxyl-terminal hydrolase 4 ubiquitin carboxyl-terminal hydrolase 4 ubiquitin carboxyl-terminal hydrolase 4 ubiquitin carboxyl-terminal hydrolase 4 ubiquitin carboxyl-terminal hydrolase 4 ubiquitin carboxyl-terminal hydrolase 4 ubiquitin carboxyl-terminal hydrolase 3 ubiquitin carboxyl-terminal hydrolase 3-like ubiquitin carboxyl-terminal hydrolase 3 ubiquitin carboxyl-terminal hydrolase 3 ubiquitin carboxyl-terminal hydrolase 3 ubiquitin carboxyl-terminal hydrolase 4 ubiquitin carboxyl-terminal hydrolase 3 ubiquitin carboxyl-terminal hydrolase 4 putative ubiquitin carboxyl-terminal hydrolase superfamily protein putative ubiquitin carboxyl-terminal hydrolase superfamily protein uncharacterized LOC100274352 ubiquitin carboxyl-terminal hydrolase 3 ubiquitin carboxyl-terminal hydrolase 3 ubiquitin carboxyl-terminal hydrolase 4 ubiquitin carboxyl-terminal hydrolase 4-like ubiquitin carboxyl-terminal hydrolase 4-like ubiquitin carboxyl-terminal hydrolase 3-like ubiquitin carboxyl-terminal hydrolase 3 ubiquitin carboxyl-terminal hydrolase 3 ubiquitin carboxyl-terminal hydrolase 4 ubiquitin carboxyl-terminal hydrolase 4 ubiquitin carboxyl-terminal hydrolase 3 ubiquitin carboxyl-terminal hydrolase 4 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 2
bra04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04130 SNARE interactions in vesicular transport 6
bna00562 Inositol phosphate metabolism 2
bna04070 Phosphatidylinositol signaling system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00562 Inositol phosphate metabolism 2
bna04070 Phosphatidylinositol signaling system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04120 Ubiquitin mediated proteolysis 2
bna00562 Inositol phosphate metabolism 2
bna04070 Phosphatidylinositol signaling system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04122 Sulfur relay system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04122 Sulfur relay system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04122 Sulfur relay system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04144 Endocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04136 Autophagy - other 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
vvi00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03015 mRNA surveillance pathway 3
ppo04382 Cornified envelope formation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03050 Proteasome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00250 Alanine, aspartate and glutamate metabolism 2
sly00230 Purine metabolism 2
sly01232 Nucleotide metabolism 2
sly01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03015 mRNA surveillance pathway 3
sly04382 Cornified envelope formation 2
sly04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04016 MAPK signaling pathway - plant 2
nta04075 Plant hormone signal transduction 2
nta04626 Plant-pathogen interaction 2
nta03008 Ribosome biogenesis in eukaryotes 2
nta03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03013 Nucleocytoplasmic transport 2
osa04120 Ubiquitin mediated proteolysis 2
osa04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04144 Endocytosis 2
osa04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04120 Ubiquitin mediated proteolysis 5
zma04141 Protein processing in endoplasmic reticulum 4
zma03015 mRNA surveillance pathway 2
zma04382 Cornified envelope formation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00020 Citrate cycle (TCA cycle) 8
zma01200 Carbon metabolism 8
zma01210 2-Oxocarboxylic acid metabolism 7
zma00010 Glycolysis / Gluconeogenesis 4
zma01230 Biosynthesis of amino acids 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00920 Sulfur metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00920 Sulfur metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00190 Oxidative phosphorylation 4
tae04145 Phagosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04626 Plant-pathogen interaction 2
hvu00510 N-Glycan biosynthesis 2
hvu04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03050 Proteasome 10
hvu00190 Oxidative phosphorylation 3
hvu04145 Phagosome 3
hvu04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03050 Proteasome 10
bdi03015 mRNA surveillance pathway 2
bdi04382 Cornified envelope formation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03030 DNA replication 2
bdi03420 Nucleotide excision repair 2
bdi03430 Mismatch repair 2
bdi03440 Homologous recombination 2
bdi03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00190 Oxidative phosphorylation 6
cre04145 Phagosome 6
cre04142 Lysosome 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 830150 816763 103853712 103837901 106361373 106368704 106382597 107950458 107937234 107942528 102622180 100787737 100794462 100812627 100253110 100253333 7471503 7490209 11415028 25501908 101250454 101257760 102582326 102579768 107776464 107804851 107806258 4336009 4331901 4329740 100304268 100280339 100274352 123165815 123098734 123139208 123426880 123402891 123449674 8072619 8081912 8057450 100839657 100846646 104583789 5722207
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