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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.str   RBP1   RNA-binding protein 1 
 ath-u.5   RBP1   RNA-binding protein 1 
 ath-r.7   RBP1   RNA-binding protein 1 
 ath-m.9   RBP1   RNA-binding protein 1 
 ath-e.2   RBP1   RNA-binding protein 1 
 ath-m.4.bio   RBP1   RNA-binding protein 1 
 ath-m.4.hor   RBP1   RNA-binding protein 1 
 ath-m.4.lig   RBP1   RNA-binding protein 1 
 ath-m.4.tis   RBP1   RNA-binding protein 1 
 bra-r.6   103838609   RNA-binding protein 1 
 bna-r.1   106366596   RNA-binding protein 1 
 bna-r.1   111211184   RNA-binding protein 1-like 
 ghi-r.1   121218187   RNA-binding protein 1 
 ghi-r.1   107930589   RNA-binding protein 1 
 gma-u.5   100816822   RNA-binding protein 1 
 gma-u.5   100786665   RNA-binding protein 1 
 vvi-u.5   100255821   uncharacterized LOC100255821 
 ppo-u.5   7472638   RNA-binding protein 1 
 mtr-u.5   25489991   heterogeneous nuclear ribonucleoprotein 1 
 sly-u.5   101254896   RNA-binding protein 1 
 sot-r.1   102582431   RNA-binding protein 1-like 
 nta-r.1   107803798   RNA-binding protein 1 
 nta-r.1   107791027   RNA-binding protein 1 
 osa-u.5   4342307   heterogeneous nuclear ribonucleoprotein 1 
 zma-u.5   103631917   DAZ-associated protein 1 
 zma-u.5   100192067   Ribonucleoprotein like protein 
 tae-r.2   123188907   RNA-binding protein 1 
 tae-r.2   123052903   RNA-binding protein 1 
 tae-r.2   123045060   heterogeneous nuclear ribonucleoprotein 1 
 hvu-r.1   123426305   heterogeneous nuclear ribonucleoprotein 1-like 
 sbi-r.1   8084186   RNA-binding protein 3 
 sbi-r.1   8084305   heterogeneous nuclear ribonucleoprotein 1 
 bdi-r.1   100846266   heterogeneous nuclear ribonucleoprotein 1 

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Top 50 coexpressed genes to RBP1 (ath-m.4.str coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to RBP1 (ath-m.4.str coexpression data)

CoexMap"842216"


athRBP1 | Entrez gene ID : 842216      
Species ath bra bna ghi gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre cit
Paralog 9 1 2 2 2 1 1 1 1 1 2 1 2 3 1 2 1 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03015 [list] [network] mRNA surveillance pathway (119 genes)
GO BP
GO CC
GO:0005737 [list] [network] cytoplasm  (14000 genes)  ISM  
GO MF
GO:0003727 [list] [network] single-stranded RNA binding  (56 genes)  IDA  
GO:0003729 [list] [network] mRNA binding  (1514 genes)  IPI  
Protein NP_001320402.1 [sequence] [blastp]
NP_176143.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  pero 4,  nucl 1,  mito 1  (predict for NP_001320402.1)
chlo 4,  pero 4,  nucl 1,  mito 1  (predict for NP_176143.1)
Subcellular
localization
TargetP
other 9  (predict for NP_001320402.1)
other 9  (predict for NP_176143.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.str
for
RBP1
ath-u.5
for
RBP1
ath-r.7
for
RBP1
ath-m.9
for
RBP1
ath-e.2
for
RBP1
ath-m.4.bio
for
RBP1
ath-m.4.hor
for
RBP1
ath-m.4.lig
for
RBP1
ath-m.4.tis
for
RBP1
bra-r.6
for
103838609
bna-r.1
for
106366596
bna-r.1
for
111211184
ghi-r.1
for
121218187
ghi-r.1
for
107930589
gma-u.5
for
100816822
gma-u.5
for
100786665
vvi-u.5
for
100255821
ppo-u.5
for
7472638
mtr-u.5
for
25489991
sly-u.5
for
101254896
sot-r.1
for
102582431
nta-r.1
for
107803798
nta-r.1
for
107791027
osa-u.5
for
4342307
zma-u.5
for
103631917
zma-u.5
for
100192067
tae-r.2
for
123188907
tae-r.2
for
123052903
tae-r.2
for
123045060
hvu-r.1
for
123426305
sbi-r.1
for
8084186
sbi-r.1
for
8084305
bdi-r.1
for
100846266


Ortholog ID: 8285
Species ath bra bna bna ghi ghi gma gma vvi ppo mtr sly sot nta nta osa zma zma tae tae tae hvu sbi sbi bdi
Symbol RBP1 LOC103838609 LOC106366596 LOC111211184 LOC121218187 LOC107930589 LOC100816822 LOC100786665 LOC100255821 LOC7472638 LOC25489991 LOC101254896 LOC102582431 LOC107803798 LOC107791027 LOC4342307 LOC103631917 LOC100192067 LOC123188907 LOC123052903 LOC123045060 LOC123426305 LOC8084186 LOC8084305 LOC100846266
Function* RNA-binding protein 1 RNA-binding protein 1 RNA-binding protein 1 RNA-binding protein 1-like RNA-binding protein 1 RNA-binding protein 1 RNA-binding protein 1 RNA-binding protein 1 uncharacterized LOC100255821 RNA-binding protein 1 heterogeneous nuclear ribonucleoprotein 1 RNA-binding protein 1 RNA-binding protein 1-like RNA-binding protein 1 RNA-binding protein 1 heterogeneous nuclear ribonucleoprotein 1 DAZ-associated protein 1 Ribonucleoprotein like protein RNA-binding protein 1 RNA-binding protein 1 heterogeneous nuclear ribonucleoprotein 1 heterogeneous nuclear ribonucleoprotein 1-like RNA-binding protein 3 heterogeneous nuclear ribonucleoprotein 1 heterogeneous nuclear ribonucleoprotein 1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04136 Autophagy - other 6
bna03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04136 Autophagy - other 6
bna03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 2
ghi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 2
ghi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03082 ATP-dependent chromatin remodeling 2
gma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 2
gma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04120 Ubiquitin mediated proteolysis 2
vvi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 3
mtr03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 4
sly03040 Spliceosome 2
sly03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03015 mRNA surveillance pathway 2
sot03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 4
nta03030 DNA replication 2
nta03420 Nucleotide excision repair 2
nta03430 Mismatch repair 2
nta03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 5
nta03030 DNA replication 2
nta03420 Nucleotide excision repair 2
nta03430 Mismatch repair 2
nta03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00600 Sphingolipid metabolism 2
zma04382 Cornified envelope formation 2
zma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04075 Plant hormone signal transduction 2
zma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00970 Aminoacyl-tRNA biosynthesis 3
tae03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00970 Aminoacyl-tRNA biosynthesis 6
tae03015 mRNA surveillance pathway 3
tae03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00520 Amino sugar and nucleotide sugar metabolism 2
hvu01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04626 Plant-pathogen interaction 2
sbi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04075 Plant hormone signal transduction 3
sbi04626 Plant-pathogen interaction 3
sbi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03013 Nucleocytoplasmic transport 3
bdi03015 mRNA surveillance pathway 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 842216 103838609 106366596 111211184 121218187 107930589 100816822 100786665 100255821 7472638 25489991 101254896 102582431 107803798 107791027 4342307 103631917 100192067 123188907 123052903 123045060 123426305 8084186 8084305 100846266
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