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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-r.7   EMB2261   Tetratricopeptide repeat (TPR)-like superfamily protein 
 ath-u.5   EMB2261   Tetratricopeptide repeat (TPR)-like superfamily protein 
 ath-e.2   EMB2261   Tetratricopeptide repeat (TPR)-like superfamily protein 
 bra-r.6   103873083   pentatricopeptide repeat-containing protein At3g49170, chloroplastic 
 bna-r.1   106397067   pentatricopeptide repeat-containing protein At3g49170, chloroplastic 
 bna-r.1   106347433   pentatricopeptide repeat-containing protein At3g49170, chloroplastic 
 ghi-r.1   107947251   pentatricopeptide repeat-containing protein At3g49170, chloroplastic-like 
 ghi-r.1   107929495   pentatricopeptide repeat-containing protein At3g49170, chloroplastic 
 cit-r.1   102621162   pentatricopeptide repeat-containing protein At3g49170, chloroplastic 
 gma-u.5   100808106   pentatricopeptide repeat-containing protein At3g49170, chloroplastic 
 vvi-u.5   100855258   pentatricopeptide repeat-containing protein At3g49170, chloroplastic 
 vvi-u.5   100854711   pentatricopeptide repeat-containing protein At3g49170, chloroplastic 
 mtr-u.5   11435163   pentatricopeptide repeat-containing protein At3g49170, chloroplastic 
 sly-u.5   101254247   pentatricopeptide repeat-containing protein At3g49170, chloroplastic 
 sot-r.1   102590198   pentatricopeptide repeat-containing protein At3g49170, chloroplastic-like 
 nta-r.1   107781006   pentatricopeptide repeat-containing protein At3g49170, chloroplastic-like 
 nta-r.1   107788225   pentatricopeptide repeat-containing protein At3g49170, chloroplastic-like 
 osa-u.5   4338098   pentatricopeptide repeat-containing protein At3g49170, chloroplastic 
 zma-u.5   103630172   pentatricopeptide repeat-containing protein At3g49170, chloroplastic 
 tae-r.2   123122149   pentatricopeptide repeat-containing protein At3g49170, chloroplastic 
 tae-r.2   123104375   pentatricopeptide repeat-containing protein At3g49170, chloroplastic 
 tae-r.2   123112658   pentatricopeptide repeat-containing protein At3g49170, chloroplastic 
 hvu-r.1   123445276   pentatricopeptide repeat-containing protein At3g49170, chloroplastic 
 sbi-r.1   8065941   pentatricopeptide repeat-containing protein At3g49170, chloroplastic 
 bdi-r.1   100844982   pentatricopeptide repeat-containing protein At3g49170, chloroplastic 

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Top 50 coexpressed genes to EMB2261 (ath-r.7 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to EMB2261 (ath-r.7 coexpression data)

CoexMap"824078"


athEMB2261 | Entrez gene ID : 824078      
Species ath bra bna ghi cit gma vvi mtr sly sot nta osa zma tae hvu sbi bdi cre ppo
Paralog 3 1 2 2 1 1 2 1 1 1 2 1 1 3 1 1 1 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009451 [list] [network] RNA modification  (230 genes)  IEA  
GO:0009793 [list] [network] embryo development ending in seed dormancy  (569 genes)  IMP NAS  
GO CC
GO:0009507 [list] [network] chloroplast  (5014 genes)  ISM  
GO MF
GO:0008270 [list] [network] zinc ion binding  (391 genes)  IEA  
GO:0003729 [list] [network] mRNA binding  (1514 genes)  IDA  
Protein NP_190486.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  cyto 4  (predict for NP_190486.2)
Subcellular
localization
TargetP
chlo 8  (predict for NP_190486.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-r.7
for
EMB2261
ath-u.5
for
EMB2261
ath-e.2
for
EMB2261
bra-r.6
for
103873083
bna-r.1
for
106397067
bna-r.1
for
106347433
ghi-r.1
for
107947251
ghi-r.1
for
107929495
cit-r.1
for
102621162
gma-u.5
for
100808106
vvi-u.5
for
100855258
vvi-u.5
for
100854711
mtr-u.5
for
11435163
sly-u.5
for
101254247
sot-r.1
for
102590198
nta-r.1
for
107781006
nta-r.1
for
107788225
osa-u.5
for
4338098
zma-u.5
for
103630172
tae-r.2
for
123122149
tae-r.2
for
123104375
tae-r.2
for
123112658
hvu-r.1
for
123445276
sbi-r.1
for
8065941
bdi-r.1
for
100844982


Ortholog ID: 9526
Species ath bra bna bna ghi ghi cit gma vvi vvi mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi
Symbol EMB2261 LOC103873083 LOC106397067 LOC106347433 LOC107947251 LOC107929495 LOC102621162 LOC100808106 LOC100854711 LOC100853016 LOC11435163 LOC101254247 LOC102590198 LOC107781006 LOC107788225 LOC4338098 LOC103630172 LOC123122149 LOC123104375 LOC123112658 LOC123445276 LOC8065941 LOC100844982
Function* Tetratricopeptide repeat (TPR)-like superfamily protein pentatricopeptide repeat-containing protein At3g49170, chloroplastic pentatricopeptide repeat-containing protein At3g49170, chloroplastic pentatricopeptide repeat-containing protein At3g49170, chloroplastic pentatricopeptide repeat-containing protein At3g49170, chloroplastic-like pentatricopeptide repeat-containing protein At3g49170, chloroplastic pentatricopeptide repeat-containing protein At3g49170, chloroplastic pentatricopeptide repeat-containing protein At3g49170, chloroplastic pentatricopeptide repeat-containing protein At3g49170, chloroplastic pentatricopeptide repeat-containing protein At3g49170, chloroplastic pentatricopeptide repeat-containing protein At3g49170, chloroplastic pentatricopeptide repeat-containing protein At3g49170, chloroplastic pentatricopeptide repeat-containing protein At3g49170, chloroplastic-like pentatricopeptide repeat-containing protein At3g49170, chloroplastic-like pentatricopeptide repeat-containing protein At3g49170, chloroplastic-like pentatricopeptide repeat-containing protein At3g49170, chloroplastic pentatricopeptide repeat-containing protein At3g49170, chloroplastic pentatricopeptide repeat-containing protein At3g49170, chloroplastic pentatricopeptide repeat-containing protein At3g49170, chloroplastic pentatricopeptide repeat-containing protein At3g49170, chloroplastic pentatricopeptide repeat-containing protein At3g49170, chloroplastic pentatricopeptide repeat-containing protein At3g49170, chloroplastic pentatricopeptide repeat-containing protein At3g49170, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00500 Starch and sucrose metabolism 2
nta04141 Protein processing in endoplasmic reticulum 2
nta04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00500 Starch and sucrose metabolism 2
nta04141 Protein processing in endoplasmic reticulum 2
nta04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00860 Porphyrin metabolism 2
hvu03018 RNA degradation 2
hvu00500 Starch and sucrose metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 824078 103873083 106397067 106347433 107947251 107929495 102621162 100808106 100854711 100853016 11435163 101254247 102590198 107781006 107788225 4338098 103630172 123122149 123104375 123112658 123445276 8065941 100844982
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