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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-r.7   PFC1   Ribosomal RNA adenine dimethylase family protein 
 ath-u.5   PFC1   Ribosomal RNA adenine dimethylase family protein 
 ath-m.9   PFC1   Ribosomal RNA adenine dimethylase family protein 
 ath-e.2   PFC1   Ribosomal RNA adenine dimethylase family protein 
 ath-m.4.bio   PFC1   Ribosomal RNA adenine dimethylase family protein 
 ath-m.4.hor   PFC1   Ribosomal RNA adenine dimethylase family protein 
 ath-m.4.lig   PFC1   Ribosomal RNA adenine dimethylase family protein 
 ath-m.4.str   PFC1   Ribosomal RNA adenine dimethylase family protein 
 ath-m.4.tis   PFC1   Ribosomal RNA adenine dimethylase family protein 
 bra-r.6   103843813   ribosomal RNA small subunit methyltransferase, chloroplastic 
 bna-r.1   106426082   ribosomal RNA small subunit methyltransferase, chloroplastic-like 
 bna-r.1   106434179   ribosomal RNA small subunit methyltransferase, chloroplastic 
 ghi-r.1   107960552   ribosomal RNA small subunit methyltransferase, chloroplastic 
 ghi-r.1   107911943   ribosomal RNA small subunit methyltransferase, chloroplastic 
 cit-r.1   102623217   ribosomal RNA small subunit methyltransferase, chloroplastic 
 gma-u.5   100790726   ribosomal RNA small subunit methyltransferase, chloroplastic 
 gma-u.5   100780381   ribosomal RNA small subunit methyltransferase, chloroplastic 
 vvi-u.5   100264412   ribosomal RNA small subunit methyltransferase, chloroplastic 
 ppo-u.5   7464904   ribosomal RNA small subunit methyltransferase, chloroplastic 
 mtr-u.5   11432602   ribosomal RNA small subunit methyltransferase, chloroplastic 
 sly-u.5   101258502   ribosomal RNA small subunit methyltransferase, chloroplastic 
 sot-r.1   102595371   ribosomal RNA small subunit methyltransferase, chloroplastic 
 nta-r.1   107801651   ribosomal RNA small subunit methyltransferase, chloroplastic-like 
 nta-r.1   107796843   ribosomal RNA small subunit methyltransferase, chloroplastic 
 osa-u.5   9271200   ribosomal RNA small subunit methyltransferase, chloroplastic 
 zma-u.5   100285018   uncharacterized LOC100285018 
 tae-r.2   123143364   ribosomal RNA small subunit methyltransferase, chloroplastic 
 tae-r.2   123135839   ribosomal RNA small subunit methyltransferase, chloroplastic 
 tae-r.2   123131875   ribosomal RNA small subunit methyltransferase, chloroplastic 
 hvu-r.1   123401918   ribosomal RNA small subunit methyltransferase, chloroplastic 
 sbi-r.1   8068269   ribosomal RNA small subunit methyltransferase, chloroplastic 
 bdi-r.1   100842973   ribosomal RNA small subunit methyltransferase, chloroplastic 
 cre-r.1   CHLRE_06g309300v5   uncharacterized protein 

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Top 50 coexpressed genes to PFC1 (ath-r.7 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to PFC1 (ath-r.7 coexpression data)

CoexMap"839283"


athPFC1 | Entrez gene ID : 839283      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 1 2 2 1 2 1 1 1 1 1 2 1 1 3 1 1 1 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009409 [list] [network] response to cold  (436 genes)  IMP  
GO CC
GO:0005739 [list] [network] mitochondrion  (4244 genes)  ISM  
GO:0009507 [list] [network] chloroplast  (5014 genes)  ISM  
GO MF
GO:0016422 [list] [network] mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity  (1 genes)  ISS  
Protein NP_001322239.1 [sequence] [blastp]
NP_001322240.1 [sequence] [blastp]
NP_001322241.1 [sequence] [blastp]
NP_001322242.1 [sequence] [blastp]
NP_171690.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 5,  cyto 2,  extr 1,  mito 1,  vacu 1  (predict for NP_001322239.1)
chlo 6,  cyto 1,  mito 1,  extr 1,  vacu 1,  cyto_nucl 1,  cyto_pero 1,  cyto_E.R. 1,  cyto_plas 1  (predict for NP_001322240.1)
cyto 9,  mito 1  (predict for NP_001322241.1)
cyto 9,  mito 1  (predict for NP_001322242.1)
chlo 7,  cyto 1,  extr 1,  vacu 1,  cyto_nucl 1,  cyto_pero 1,  cyto_E.R. 1,  cyto_plas 1  (predict for NP_171690.1)
Subcellular
localization
TargetP
chlo 9  (predict for NP_001322239.1)
chlo 9  (predict for NP_001322240.1)
other 8  (predict for NP_001322241.1)
other 8  (predict for NP_001322242.1)
chlo 9  (predict for NP_171690.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-r.7
for
PFC1
ath-u.5
for
PFC1
ath-m.9
for
PFC1
ath-e.2
for
PFC1
ath-m.4.bio
for
PFC1
ath-m.4.hor
for
PFC1
ath-m.4.lig
for
PFC1
ath-m.4.str
for
PFC1
ath-m.4.tis
for
PFC1
bra-r.6
for
103843813
bna-r.1
for
106426082
bna-r.1
for
106434179
ghi-r.1
for
107960552
ghi-r.1
for
107911943
cit-r.1
for
102623217
gma-u.5
for
100790726
gma-u.5
for
100780381
vvi-u.5
for
100264412
ppo-u.5
for
7464904
mtr-u.5
for
11432602
sly-u.5
for
101258502
sot-r.1
for
102595371
nta-r.1
for
107801651
nta-r.1
for
107796843
osa-u.5
for
9271200
zma-u.5
for
100285018
tae-r.2
for
123143364
tae-r.2
for
123135839
tae-r.2
for
123131875
hvu-r.1
for
123401918
sbi-r.1
for
8068269
bdi-r.1
for
100842973
cre-r.1
for
CHLRE_06g309300v5


Ortholog ID: 10480
Species ath bra bna bna ghi ghi cit gma gma vvi ppo mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi cre
Symbol PFC1 LOC103843813 LOC106426082 LOC106434179 LOC107960552 LOC107911943 LOC102623217 LOC100790726 LOC100780381 LOC100264412 LOC7464904 LOC11432602 LOC101258502 LOC102595371 LOC107801651 LOC107796843 LOC9271200 LOC100285018 LOC123143364 LOC123135839 LOC123131875 LOC123401918 LOC8068269 LOC100842973 CHLRE_06g309300v5
Function* Ribosomal RNA adenine dimethylase family protein ribosomal RNA small subunit methyltransferase, chloroplastic ribosomal RNA small subunit methyltransferase, chloroplastic-like ribosomal RNA small subunit methyltransferase, chloroplastic ribosomal RNA small subunit methyltransferase, chloroplastic ribosomal RNA small subunit methyltransferase, chloroplastic ribosomal RNA small subunit methyltransferase, chloroplastic ribosomal RNA small subunit methyltransferase, chloroplastic ribosomal RNA small subunit methyltransferase, chloroplastic ribosomal RNA small subunit methyltransferase, chloroplastic ribosomal RNA small subunit methyltransferase, chloroplastic ribosomal RNA small subunit methyltransferase, chloroplastic ribosomal RNA small subunit methyltransferase, chloroplastic ribosomal RNA small subunit methyltransferase, chloroplastic ribosomal RNA small subunit methyltransferase, chloroplastic-like ribosomal RNA small subunit methyltransferase, chloroplastic ribosomal RNA small subunit methyltransferase, chloroplastic uncharacterized LOC100285018 ribosomal RNA small subunit methyltransferase, chloroplastic ribosomal RNA small subunit methyltransferase, chloroplastic ribosomal RNA small subunit methyltransferase, chloroplastic ribosomal RNA small subunit methyltransferase, chloroplastic ribosomal RNA small subunit methyltransferase, chloroplastic ribosomal RNA small subunit methyltransferase, chloroplastic uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03060 Protein export 2
bna04141 Protein processing in endoplasmic reticulum 2
bna04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03060 Protein export 2
bna04141 Protein processing in endoplasmic reticulum 2
bna04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00220 Arginine biosynthesis 2
gma00330 Arginine and proline metabolism 2
gma04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 4
sly01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00860 Porphyrin metabolism 2
nta01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03030 DNA replication 2
tae03410 Base excision repair 2
tae03450 Non-homologous end-joining 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03018 RNA degradation 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 839283 103843813 106426082 106434179 107960552 107911943 102623217 100790726 100780381 100264412 7464904 11432602 101258502 102595371 107801651 107796843 9271200 100285018 123143364 123135839 123131875 123401918 8068269 100842973 5716827
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