ATTED-II : GeneCoexpression result

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ghi-r.1	107911943	ribosomal RNA small subunit methyltransferase, chloroplastic
ghi-r.1	107960552	ribosomal RNA small subunit methyltransferase, chloroplastic
ath-u.5	PFC1	Ribosomal RNA adenine dimethylase family protein
bra-r.6	103843813	ribosomal RNA small subunit methyltransferase, chloroplastic
bna-r.1	106426082	ribosomal RNA small subunit methyltransferase, chloroplastic-like
bna-r.1	106434179	ribosomal RNA small subunit methyltransferase, chloroplastic
cit-r.1	102623217	ribosomal RNA small subunit methyltransferase, chloroplastic
gma-u.5	100790726	ribosomal RNA small subunit methyltransferase, chloroplastic
gma-u.5	100780381	ribosomal RNA small subunit methyltransferase, chloroplastic
vvi-u.5	100264412	ribosomal RNA small subunit methyltransferase, chloroplastic
ppo-u.5	7464904	ribosomal RNA small subunit methyltransferase, chloroplastic
mtr-u.5	11432602	ribosomal RNA small subunit methyltransferase, chloroplastic
sly-u.5	101258502	ribosomal RNA small subunit methyltransferase, chloroplastic
sot-r.1	102595371	ribosomal RNA small subunit methyltransferase, chloroplastic
nta-r.1	107796843	ribosomal RNA small subunit methyltransferase, chloroplastic
nta-r.1	107801651	ribosomal RNA small subunit methyltransferase, chloroplastic-like
osa-u.5	9271200	ribosomal RNA small subunit methyltransferase, chloroplastic
zma-u.5	100285018	uncharacterized LOC100285018
tae-r.2	123135839	ribosomal RNA small subunit methyltransferase, chloroplastic
tae-r.2	123131875	ribosomal RNA small subunit methyltransferase, chloroplastic
tae-r.2	123143364	ribosomal RNA small subunit methyltransferase, chloroplastic
hvu-r.1	123401918	ribosomal RNA small subunit methyltransferase, chloroplastic
sbi-r.1	8068269	ribosomal RNA small subunit methyltransferase, chloroplastic
bdi-r.1	100842973	ribosomal RNA small subunit methyltransferase, chloroplastic
cre-r.1	CHLRE_06g309300v5	uncharacterized protein

Annotation

functional annotation

KEGG

GO BP

GO:0031167 [list] [network] rRNA methylation

(55 genes)

IEA

GO CC

GO MF

GO:0000179 [list] [network] rRNA (adenine-N6,N6-)-dimethyltransferase activity

(6 genes)

IEA

Protein

XP_016695442.1 [sequence] [blastp]
XP_016695443.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 9, chlo_mito 5	(predict for XP_016695442.1)
chlo 9, chlo_mito 6	(predict for XP_016695443.1)

Subcellular
localization
TargetP

chlo 9	(predict for XP_016695442.1)
chlo 9	(predict for XP_016695443.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ghi-r.1 for 107911943	ghi-r.1 for 107960552	ath-u.5 for PFC1	bra-r.6 for 103843813	bna-r.1 for 106426082	bna-r.1 for 106434179	cit-r.1 for 102623217	gma-u.5 for 100790726	gma-u.5 for 100780381	vvi-u.5 for 100264412	ppo-u.5 for 7464904	mtr-u.5 for 11432602	sly-u.5 for 101258502	sot-r.1 for 102595371	nta-r.1 for 107796843	nta-r.1 for 107801651	osa-u.5 for 9271200	zma-u.5 for 100285018	tae-r.2 for 123135839	tae-r.2 for 123131875	tae-r.2 for 123143364	hvu-r.1 for 123401918	sbi-r.1 for 8068269	bdi-r.1 for 100842973	cre-r.1 for CHLRE_06g309300v5

Ortholog

Ortholog ID: 10480

Species

ghi

ath

bra

bna

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

PFC1

Function^*