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Orthologous genes in OrthoFinder**

Species Gene Description
 zma-u.5   100037819   ragged seedling 1 
 zma-r.6   100037819   ragged seedling 1 
 zma-m.5   100037819   ragged seedling 1 
 zma-u.5   103650615   protein SUPPRESSOR OF GENE SILENCING 3 homolog 
 sbi-r.1   8082808   protein SUPPRESSOR OF GENE SILENCING 3 homolog 
 sbi-r.1   8082807   protein SUPPRESSOR OF GENE SILENCING 3 homolog 
 osa-u.5   4351724   protein SUPPRESSOR OF GENE SILENCING 3 homolog 
 osa-u.5   4351726   protein SUPPRESSOR OF GENE SILENCING 3 homolog 
 tae-r.2   123088654   protein SUPPRESSOR OF GENE SILENCING 3 homolog 
 tae-r.2   123110995   protein SUPPRESSOR OF GENE SILENCING 3 homolog 
 hvu-r.1   123398315   protein SUPPRESSOR OF GENE SILENCING 3 homolog 
 bdi-r.1   100838532   protein SUPPRESSOR OF GENE SILENCING 3 homolog 
 ath-u.5   SGS3   XS domain-containing protein / XS zinc finger domain-containing protein-like protein 
 gma-u.5   100792019   protein SUPPRESSOR OF GENE SILENCING 3 
 gma-u.5   100804352   protein SUPPRESSOR OF GENE SILENCING 3 
 gma-u.5   100807738   protein SUPPRESSOR OF GENE SILENCING 3 
 sly-u.5   SGS3   SGS3-like protein 
 bra-r.6   103874228   protein SUPPRESSOR OF GENE SILENCING 3 
 vvi-u.5   100245878   protein SUPPRESSOR OF GENE SILENCING 3 
 ppo-u.5   112325062   protein SUPPRESSOR OF GENE SILENCING 3 
 ppo-u.5   7484099   protein SUPPRESSOR OF GENE SILENCING 3-like 
 mtr-u.5   11435052   protein SUPPRESSOR OF GENE SILENCING 3 
 mtr-u.5   11419957   protein SUPPRESSOR OF GENE SILENCING 3 
 ghi-r.1   107896872   protein SUPPRESSOR OF GENE SILENCING 3 
 ghi-r.1   107896873   protein SUPPRESSOR OF GENE SILENCING 3 
 ghi-r.1   107914420   protein SUPPRESSOR OF GENE SILENCING 3 
 bna-r.1   106348321   protein SUPPRESSOR OF GENE SILENCING 3 
 bna-r.1   111198673   protein SUPPRESSOR OF GENE SILENCING 3 
 sot-r.1   102603754   protein SUPPRESSOR OF GENE SILENCING 3 
 cit-r.1   102610323   protein SUPPRESSOR OF GENE SILENCING 3 
 nta-r.1   107800768   protein SUPPRESSOR OF GENE SILENCING 3-like 
 nta-r.1   107764764   protein SUPPRESSOR OF GENE SILENCING 3-like 

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Top 50 coexpressed genes to 100037819 (zma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100037819 (zma-u.5 coexpression data)

CoexMap"100037819"


zmaLOC100037819 | Entrez gene ID : 100037819      
Species zma sbi osa tae hvu bdi ath gma sly bra vvi ppo mtr ghi bna sot cit nta cre
Paralog 4 2 2 2 1 1 1 3 1 1 1 2 2 3 2 1 1 2 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0051607 [list] [network] defense response to virus  (2 genes)  IEA  
GO:0031047 [list] [network] regulatory ncRNA-mediated gene silencing  (47 genes)  IEA  
GO CC
GO MF
Protein NP_001105989.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  cyto_nucl 4,  chlo 3  (predict for NP_001105989.1)
Subcellular
localization
TargetP
other 7,  chlo 3  (predict for NP_001105989.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

zma-u.5
for
100037819
zma-r.6
for
100037819
zma-m.5
for
100037819
zma-u.5
for
103650615
sbi-r.1
for
8082808
sbi-r.1
for
8082807
osa-u.5
for
4351724
osa-u.5
for
4351726
tae-r.2
for
123088654
tae-r.2
for
123110995
hvu-r.1
for
123398315
bdi-r.1
for
100838532
ath-u.5
for
SGS3
gma-u.5
for
100792019
gma-u.5
for
100804352
gma-u.5
for
100807738
sly-u.5
for
SGS3
bra-r.6
for
103874228
vvi-u.5
for
100245878
ppo-u.5
for
112325062
ppo-u.5
for
7484099
mtr-u.5
for
11435052
mtr-u.5
for
11419957
ghi-r.1
for
107896872
ghi-r.1
for
107896873
ghi-r.1
for
107914420
bna-r.1
for
106348321
bna-r.1
for
111198673
sot-r.1
for
102603754
cit-r.1
for
102610323
nta-r.1
for
107800768
nta-r.1
for
107764764


Ortholog ID: 5177
Species zma zma sbi sbi osa osa tae tae tae hvu bdi ath gma gma gma sly bra vvi ppo ppo mtr mtr ghi ghi ghi bna bna sot cit nta nta
Symbol LOC100037819 LOC103650615 LOC8082808 LOC8082807 LOC4351724 LOC4351726 LOC123088654 LOC123110995 LOC123165216 LOC123398315 LOC100838532 SGS3 LOC100792019 LOC100804352 LOC100807738 SGS3 LOC103874228 LOC100245878 LOC112325062 LOC7484099 LOC11435052 LOC11419957 LOC107896872 LOC107896873 LOC107958685 LOC106348321 LOC111198673 LOC102603754 LOC102610323 LOC107800768 LOC107764764
Function* ragged seedling 1 protein SUPPRESSOR OF GENE SILENCING 3 homolog protein SUPPRESSOR OF GENE SILENCING 3 homolog protein SUPPRESSOR OF GENE SILENCING 3 homolog protein SUPPRESSOR OF GENE SILENCING 3 homolog protein SUPPRESSOR OF GENE SILENCING 3 homolog protein SUPPRESSOR OF GENE SILENCING 3 homolog protein SUPPRESSOR OF GENE SILENCING 3 homolog protein SUPPRESSOR OF GENE SILENCING 3 homolog protein SUPPRESSOR OF GENE SILENCING 3 homolog protein SUPPRESSOR OF GENE SILENCING 3 homolog XS domain-containing protein / XS zinc finger domain-containing protein-like protein protein SUPPRESSOR OF GENE SILENCING 3 protein SUPPRESSOR OF GENE SILENCING 3 protein SUPPRESSOR OF GENE SILENCING 3 SGS3-like protein protein SUPPRESSOR OF GENE SILENCING 3 protein SUPPRESSOR OF GENE SILENCING 3 protein SUPPRESSOR OF GENE SILENCING 3 protein SUPPRESSOR OF GENE SILENCING 3-like protein SUPPRESSOR OF GENE SILENCING 3 protein SUPPRESSOR OF GENE SILENCING 3 protein SUPPRESSOR OF GENE SILENCING 3 protein SUPPRESSOR OF GENE SILENCING 3 protein SUPPRESSOR OF GENE SILENCING 3 protein SUPPRESSOR OF GENE SILENCING 3 protein SUPPRESSOR OF GENE SILENCING 3 protein SUPPRESSOR OF GENE SILENCING 3 protein SUPPRESSOR OF GENE SILENCING 3 protein SUPPRESSOR OF GENE SILENCING 3-like protein SUPPRESSOR OF GENE SILENCING 3-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03013 Nucleocytoplasmic transport 4
zma03083 Polycomb repressive complex 3
zma03082 ATP-dependent chromatin remodeling 2
zma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03420 Nucleotide excision repair 3
bdi03030 DNA replication 2
bdi03410 Base excision repair 2
bdi03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03015 mRNA surveillance pathway 2
ath03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04142 Lysosome 2
gma04120 Ubiquitin mediated proteolysis 2
gma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 5
sly03022 Basal transcription factors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 2
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04120 Ubiquitin mediated proteolysis 3
mtr03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03250 Viral life cycle - HIV-1 2
ghi03040 Spliceosome 2
ghi03030 DNA replication 2
ghi03410 Base excision repair 2
ghi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03030 DNA replication 2
ghi03410 Base excision repair 2
ghi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04120 Ubiquitin mediated proteolysis 2
nta03082 ATP-dependent chromatin remodeling 2
nta04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04120 Ubiquitin mediated proteolysis 2
nta03082 ATP-dependent chromatin remodeling 2
nta04075 Plant hormone signal transduction 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100037819 103650615 8082808 8082807 4351724 4351726 123088654 123110995 123165216 123398315 100838532 832422 100792019 100804352 100807738 100134882 103874228 100245878 112325062 7484099 11435052 11419957 107896872 107896873 107958685 106348321 111198673 102603754 102610323 107800768 107764764
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