ATTED-II : GeneCoexpression result

Species	Gene	Description
ppo-u.5	112325062	protein SUPPRESSOR OF GENE SILENCING 3
ppo-r.4	112325062	protein SUPPRESSOR OF GENE SILENCING 3
ppo-u.5	7484099	protein SUPPRESSOR OF GENE SILENCING 3-like
gma-u.5	100807738	protein SUPPRESSOR OF GENE SILENCING 3
gma-u.5	100792019	protein SUPPRESSOR OF GENE SILENCING 3
gma-u.5	100804352	protein SUPPRESSOR OF GENE SILENCING 3
mtr-u.5	11435052	protein SUPPRESSOR OF GENE SILENCING 3
mtr-u.5	11419957	protein SUPPRESSOR OF GENE SILENCING 3
ath-u.5	SGS3	XS domain-containing protein / XS zinc finger domain-containing protein-like protein
vvi-u.5	100245878	protein SUPPRESSOR OF GENE SILENCING 3
sly-u.5	SGS3	SGS3-like protein
osa-u.5	4351726	protein SUPPRESSOR OF GENE SILENCING 3 homolog
osa-u.5	4351724	protein SUPPRESSOR OF GENE SILENCING 3 homolog
zma-u.5	103650615	protein SUPPRESSOR OF GENE SILENCING 3 homolog
zma-u.5	100037819	ragged seedling 1

Annotation

functional annotation

KEGG

GO BP

GO:0051607 [list] [network] defense response to virus	(9 genes)	IEA
GO:0031047 [list] [network] regulatory ncRNA-mediated gene silencing	(66 genes)	IEA

GO CC

GO MF

Protein

XP_024446273.1 [sequence] [blastp]
XP_024446274.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 7, cyto_nucl 4, chlo 1, plas 1, pero 1	(predict for XP_024446273.1)
nucl 7, cyto_nucl 4, chlo 1, plas 1, pero 1	(predict for XP_024446274.1)

Subcellular
localization
TargetP

other 4, chlo 3	(predict for XP_024446273.1)
other 4, chlo 3	(predict for XP_024446274.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ppo-u.5 for 112325062	ppo-r.4 for 112325062	ppo-u.5 for 7484099	gma-u.5 for 100807738	gma-u.5 for 100792019	gma-u.5 for 100804352	mtr-u.5 for 11435052	mtr-u.5 for 11419957	ath-u.5 for SGS3	vvi-u.5 for 100245878	sly-u.5 for SGS3	osa-u.5 for 4351726	osa-u.5 for 4351724	zma-u.5 for 103650615	zma-u.5 for 100037819

Ortholog

Ortholog ID: 5177

Species

ppo

gma

mtr

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

SGS3

SGS3

Function^*

protein SUPPRESSOR OF GENE SILENCING 3-like

protein SUPPRESSOR OF GENE SILENCING 3

XS domain-containing protein / XS zinc finger domain-containing protein-like protein

protein SUPPRESSOR OF GENE SILENCING 3

SGS3-like protein

protein SUPPRESSOR OF GENE SILENCING 3

protein SUPPRESSOR OF GENE SILENCING 3-like

protein SUPPRESSOR OF GENE SILENCING 3 homolog

ragged seedling 1

protein SUPPRESSOR OF GENE SILENCING 3 homolog

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04142	Lysosome	2
gma04120	Ubiquitin mediated proteolysis	2
gma04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04120	Ubiquitin mediated proteolysis	3
mtr03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03015	mRNA surveillance pathway	2
ath03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03008	Ribosome biogenesis in eukaryotes	2
vvi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03250	Viral life cycle - HIV-1	2
ghi03040	Spliceosome	2
ghi03030	DNA replication	2
ghi03410	Base excision repair	2
ghi03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03030	DNA replication	2
ghi03410	Base excision repair	2
ghi03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	5
sly03022	Basal transcription factors	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04120	Ubiquitin mediated proteolysis	2
nta03082	ATP-dependent chromatin remodeling	2
nta04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04120	Ubiquitin mediated proteolysis	2
nta03082	ATP-dependent chromatin remodeling	2
nta04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03013	Nucleocytoplasmic transport	4
zma03083	Polycomb repressive complex	3
zma03082	ATP-dependent chromatin remodeling	2
zma03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03420	Nucleotide excision repair	3
bdi03030	DNA replication	2
bdi03410	Base excision repair	2
bdi03430	Mismatch repair	2

Expression

Expression pattern

Entrez Gene ID^*

7484099

112325062

100804352

100807738

11435052

11419957

832422

103874228

100245878

107896872

107896873

106348321

111198673

102610323

100134882

102603754

107764764

107800768

4351724

4351726

103650615

100037819

123088654

123165216

123398315

8082807

8082808

100838532

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 112325062 (ppo-u.5 coexpression data)

Top 50 enrichment test to 112325062 (ppo-u.5 coexpression data)


Species	ppo	gma	mtr	ath	vvi	sly	osa	zma	bdi	hvu	bra	cit	bna	sbi	ghi	sot	nta	cre	tae
Paralog	3	3	2	1	1	1	2	2	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 112325062 (ppo-u.5 coexpression data)

Top 50 enrichment test to 112325062 (ppo-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**