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Orthologous genes in OrthoFinder**

Species Gene Description
 osa-u.5   4351724   protein SUPPRESSOR OF GENE SILENCING 3 homolog 
 osa-r.6   4351724   protein SUPPRESSOR OF GENE SILENCING 3 homolog 
 osa-m.8   4351724   protein SUPPRESSOR OF GENE SILENCING 3 homolog 
 osa-e.1   4351724   protein SUPPRESSOR OF GENE SILENCING 3 homolog 
 osa-u.5   4351726   protein SUPPRESSOR OF GENE SILENCING 3 homolog 
 zma-u.5   103650615   protein SUPPRESSOR OF GENE SILENCING 3 homolog 
 zma-u.5   100037819   ragged seedling 1 
 ath-u.5   SGS3   XS domain-containing protein / XS zinc finger domain-containing protein-like protein 
 gma-u.5   100792019   protein SUPPRESSOR OF GENE SILENCING 3 
 gma-u.5   100804352   protein SUPPRESSOR OF GENE SILENCING 3 
 gma-u.5   100807738   protein SUPPRESSOR OF GENE SILENCING 3 
 sly-u.5   SGS3   SGS3-like protein 
 vvi-u.5   100245878   protein SUPPRESSOR OF GENE SILENCING 3 
 ppo-u.5   112325062   protein SUPPRESSOR OF GENE SILENCING 3 
 ppo-u.5   7484099   protein SUPPRESSOR OF GENE SILENCING 3-like 
 mtr-u.5   11435052   protein SUPPRESSOR OF GENE SILENCING 3 
 mtr-u.5   11419957   protein SUPPRESSOR OF GENE SILENCING 3 

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Top 50 coexpressed genes to 4351724 (osa-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 4351724 (osa-u.5 coexpression data)

CoexMap"4351724"


osaLOC4351724 | Entrez gene ID : 4351724      
Species osa zma ath gma sly vvi ppo mtr tae hvu ghi bdi cit bra cre sbi bna nta sot
Paralog 5 2 1 3 1 1 2 2 0 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0051607 [list] [network] defense response to virus  (2 genes)  IEA  
GO:0031047 [list] [network] regulatory ncRNA-mediated gene silencing  (74 genes)  IEA  
GO CC
GO MF
Protein NP_001410287.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9  (predict for NP_001410287.1)
Subcellular
localization
TargetP
other 8  (predict for NP_001410287.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

osa-u.5
for
4351724

.
osa-r.6
for
4351724

.
osa-m.8
for
4351724

.
osa-e.1
for
4351724

.
osa-u.5
for
4351726

.
zma-u.5
for
103650615

.
zma-u.5
for
100037819

.
ath-u.5
for
SGS3

.
gma-u.5
for
100792019

.
gma-u.5
for
100804352

.
gma-u.5
for
100807738

.
sly-u.5
for
SGS3

.
vvi-u.5
for
100245878

.
ppo-u.5
for
112325062

.
ppo-u.5
for
7484099

.
mtr-u.5
for
11435052

.
mtr-u.5
for
11419957

.


Ortholog ID: 5177
Species ath gma gma sly osa osa zma zma bra vvi ppo ppo mtr mtr tae tae hvu ghi ghi bna bna sbi sbi sot cit bdi nta nta
Symbol SGS3 LOC100804352 LOC100807738 SGS3 LOC4351724 LOC4351726 LOC103650615 LOC100037819 LOC103874228 LOC100245878 LOC7484099 LOC112325062 LOC11435052 LOC11419957 LOC123088654 LOC123165216 LOC123398315 LOC107896872 LOC107896873 LOC106348321 LOC111198673 LOC8082807 LOC8082808 LOC102603754 LOC102610323 LOC100838532 LOC107764764 LOC107800768
Function* XS domain-containing protein / XS zinc finger domain-containing protein-like protein protein SUPPRESSOR OF GENE SILENCING 3 protein SUPPRESSOR OF GENE SILENCING 3 SGS3-like protein protein SUPPRESSOR OF GENE SILENCING 3 homolog protein SUPPRESSOR OF GENE SILENCING 3 homolog protein SUPPRESSOR OF GENE SILENCING 3 homolog ragged seedling 1 protein SUPPRESSOR OF GENE SILENCING 3 protein SUPPRESSOR OF GENE SILENCING 3 protein SUPPRESSOR OF GENE SILENCING 3-like protein SUPPRESSOR OF GENE SILENCING 3 protein SUPPRESSOR OF GENE SILENCING 3 protein SUPPRESSOR OF GENE SILENCING 3 protein SUPPRESSOR OF GENE SILENCING 3 homolog protein SUPPRESSOR OF GENE SILENCING 3 homolog protein SUPPRESSOR OF GENE SILENCING 3 homolog protein SUPPRESSOR OF GENE SILENCING 3 protein SUPPRESSOR OF GENE SILENCING 3 protein SUPPRESSOR OF GENE SILENCING 3 protein SUPPRESSOR OF GENE SILENCING 3 protein SUPPRESSOR OF GENE SILENCING 3 homolog protein SUPPRESSOR OF GENE SILENCING 3 homolog protein SUPPRESSOR OF GENE SILENCING 3 protein SUPPRESSOR OF GENE SILENCING 3 protein SUPPRESSOR OF GENE SILENCING 3 homolog protein SUPPRESSOR OF GENE SILENCING 3-like protein SUPPRESSOR OF GENE SILENCING 3-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03015 mRNA surveillance pathway 2
ath03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04142 Lysosome 2
gma04120 Ubiquitin mediated proteolysis 2
gma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 5
sly03022 Basal transcription factors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03013 Nucleocytoplasmic transport 4
zma03083 Polycomb repressive complex 3
zma03082 ATP-dependent chromatin remodeling 2
zma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 2
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04120 Ubiquitin mediated proteolysis 3
mtr03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03250 Viral life cycle - HIV-1 2
ghi03040 Spliceosome 2
ghi03030 DNA replication 2
ghi03410 Base excision repair 2
ghi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03030 DNA replication 2
ghi03410 Base excision repair 2
ghi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03420 Nucleotide excision repair 3
bdi03030 DNA replication 2
bdi03410 Base excision repair 2
bdi03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04120 Ubiquitin mediated proteolysis 2
nta03082 ATP-dependent chromatin remodeling 2
nta04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04120 Ubiquitin mediated proteolysis 2
nta03082 ATP-dependent chromatin remodeling 2
nta04075 Plant hormone signal transduction 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 832422 100804352 100807738 100134882 4351724 4351726 103650615 100037819 103874228 100245878 7484099 112325062 11435052 11419957 123088654 123165216 123398315 107896872 107896873 106348321 111198673 8082807 8082808 102603754 102610323 100838532 107764764 107800768
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