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Orthologous genes in OrthoFinder**

Species Gene Description
 zma-u.5   100193201   heterogeneous nuclear ribonucleoprotein 27C 
 zma-r.6   100193201   heterogeneous nuclear ribonucleoprotein 27C 
 zma-m.5   100193201   heterogeneous nuclear ribonucleoprotein 27C 
 zma-u.5   100285224   heterogeneous nuclear ribonucleoprotein 27C 
 osa-u.5   4325826   heterogeneous nuclear ribonucleoprotein 1 
 ath-u.5   AT4G36960   RNA-binding (RRM/RBD/RNP motifs) family protein 
 gma-u.5   100808084   heterogeneous nuclear ribonucleoprotein 1 
 gma-u.5   100795240   DAZ-associated protein 1 
 sly-u.5   101267666   uncharacterized LOC101267666 
 vvi-u.5   100247389   uncharacterized LOC100247389 
 ppo-u.5   7483111   uncharacterized LOC7483111 
 ppo-u.5   7489734   uncharacterized LOC7489734 
 mtr-u.5   120577404   RNA-binding protein Musashi homolog 2 
 mtr-u.5   11410929   RNA-binding protein Musashi homolog 2 

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Top 50 coexpressed genes to 100193201 (zma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100193201 (zma-u.5 coexpression data)

CoexMap"100193201"


zmaLOC100193201 | Entrez gene ID : 100193201      
Species zma osa ath gma sly vvi ppo mtr sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 4 1 1 2 1 1 2 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG zma03015 [list] [network] mRNA surveillance pathway (165 genes)
GO BP
GO CC
GO MF
GO:0003723 [list] [network] RNA binding  (1549 genes)  IEA  
Protein NP_001131827.1 [sequence] [blastp]
XP_008654344.1 [sequence] [blastp]
XP_008654345.1 [sequence] [blastp]
XP_008654346.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 5,  cysk 3,  nucl 2  (predict for NP_001131827.1)
cyto 5,  cysk 3,  nucl 2  (predict for XP_008654344.1)
cyto 5,  cysk 3,  nucl 2  (predict for XP_008654345.1)
cyto 5,  cysk 3,  nucl 2  (predict for XP_008654346.1)
Subcellular
localization
TargetP
other 8  (predict for NP_001131827.1)
other 8  (predict for XP_008654344.1)
other 8  (predict for XP_008654345.1)
other 8  (predict for XP_008654346.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

zma-u.5
for
100193201

.
zma-r.6
for
100193201

.
zma-m.5
for
100193201

.
zma-u.5
for
100285224

.
osa-u.5
for
4325826

.
ath-u.5
for
AT4G36960

.
gma-u.5
for
100808084

.
gma-u.5
for
100795240

.
sly-u.5
for
101267666

.
vvi-u.5
for
100247389

.
ppo-u.5
for
7483111

.
ppo-u.5
for
7489734

.
mtr-u.5
for
120577404

.
mtr-u.5
for
11410929

.


Ortholog ID: 6948
Species ath gma gma sly osa zma zma bra vvi ppo ppo mtr mtr tae tae ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol AT4G36960 LOC100795240 LOC100808084 LOC101267666 LOC4325826 LOC100285224 LOC100193201 LOC103862517 LOC100247389 LOC7489734 LOC7483111 LOC120577404 LOC11410929 LOC123181828 LOC123130390 LOC107913246 LOC107925197 LOC106445512 LOC106410704 CHLRE_16g662702v5 LOC110433925 LOC102591610 LOC102620595 LOC100845489 LOC107778564 LOC107788630
Function* RNA-binding (RRM/RBD/RNP motifs) family protein DAZ-associated protein 1 heterogeneous nuclear ribonucleoprotein 1 uncharacterized LOC101267666 heterogeneous nuclear ribonucleoprotein 1 heterogeneous nuclear ribonucleoprotein 27C heterogeneous nuclear ribonucleoprotein 27C heterogeneous nuclear ribonucleoprotein A/B uncharacterized LOC100247389 uncharacterized LOC7489734 uncharacterized LOC7483111 RNA-binding protein Musashi homolog 2 RNA-binding protein Musashi homolog 2 28 kDa ribonucleoprotein, chloroplastic 28 kDa ribonucleoprotein, chloroplastic DAZ-associated protein 1 heterogeneous nuclear ribonucleoprotein A2 homolog 2 RNA-binding protein Musashi homolog 2 RNA-binding protein Musashi homolog 2 uncharacterized protein RNA-binding protein Musashi homolog 2 heterogeneous nuclear ribonucleoprotein D-like uncharacterized LOC102620595 heterogeneous nuclear ribonucleoprotein A2 homolog 2 heterogeneous nuclear ribonucleoprotein 1 heterogeneous nuclear ribonucleoprotein 1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 8
gma03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 3
gma03250 Viral life cycle - HIV-1 3
gma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 8
sly03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03022 Basal transcription factors 2
osa03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03015 mRNA surveillance pathway 4
zma03040 Spliceosome 4
zma03013 Nucleocytoplasmic transport 2
zma03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03015 mRNA surveillance pathway 3
zma03008 Ribosome biogenesis in eukaryotes 2
zma04712 Circadian rhythm - plant 2
zma03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04120 Ubiquitin mediated proteolysis 2
bra01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 4
vvi04141 Protein processing in endoplasmic reticulum 2
vvi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04144 Endocytosis 3
ppo03083 Polycomb repressive complex 3
ppo03082 ATP-dependent chromatin remodeling 2
ppo04141 Protein processing in endoplasmic reticulum 2
ppo03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04144 Endocytosis 5
ppo03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 6
mtr00510 N-Glycan biosynthesis 3
mtr03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 7
mtr03015 mRNA surveillance pathway 4
mtr03010 Ribosome 2
mtr03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 8
tae04382 Cornified envelope formation 3
tae03013 Nucleocytoplasmic transport 3
tae03040 Spliceosome 3
tae00330 Arginine and proline metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 8
tae04382 Cornified envelope formation 3
tae03013 Nucleocytoplasmic transport 3
tae03040 Spliceosome 3
tae03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03050 Proteasome 8
sbi03015 mRNA surveillance pathway 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03050 Proteasome 4
bdi03040 Spliceosome 3
bdi03008 Ribosome biogenesis in eukaryotes 2
bdi03013 Nucleocytoplasmic transport 2
bdi03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03015 mRNA surveillance pathway 5
nta03013 Nucleocytoplasmic transport 3
nta03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03015 mRNA surveillance pathway 5
nta03013 Nucleocytoplasmic transport 3
nta03040 Spliceosome 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 829850 100795240 100808084 101267666 4325826 100285224 100193201 103862517 100247389 7489734 7483111 120577404 11410929 123181828 123130390 107913246 107925197 106445512 106410704 5723512 110433925 102591610 102620595 100845489 107778564 107788630
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