ATTED-II : GeneCoexpression result

Species	Gene	Description
mtr-u.5	11410929	RNA-binding protein Musashi homolog 2
mtr-r.5	11410929	RNA-binding protein Musashi homolog 2
mtr-m.5	11410929	RNA-binding protein Musashi homolog 2
mtr-u.5	120577404	RNA-binding protein Musashi homolog 2
gma-u.5	100808084	heterogeneous nuclear ribonucleoprotein 1
gma-u.5	100795240	DAZ-associated protein 1
ppo-u.5	7483111	uncharacterized LOC7483111
ppo-u.5	7489734	uncharacterized LOC7489734
ath-u.5	AT4G36960	RNA-binding (RRM/RBD/RNP motifs) family protein
vvi-u.5	100247389	uncharacterized LOC100247389
sly-u.5	101267666	uncharacterized LOC101267666
osa-u.5	4325826	heterogeneous nuclear ribonucleoprotein 1
zma-u.5	100193201	heterogeneous nuclear ribonucleoprotein 27C
zma-u.5	100285224	heterogeneous nuclear ribonucleoprotein 27C

Annotation

functional annotation

KEGG

mtr03015 [list] [network] mRNA surveillance pathway (125 genes)

GO BP

GO:0010468 [list] [network] regulation of gene expression

(1961 genes)

IEA

GO CC

GO:0005654 [list] [network] nucleoplasm	(202 genes)	IEA
GO:0000785 [list] [network] chromatin	(246 genes)	IEA

GO MF

GO:0003723 [list] [network] RNA binding

(1400 genes)

IEA

Protein

XP_003611735.2 [sequence] [blastp]

Subcellular
localization
wolf

nucl 6, cyto 4

(predict for XP_003611735.2)

Subcellular
localization
TargetP

other 8

(predict for XP_003611735.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	mtr-u.5 for 11410929	mtr-r.5 for 11410929	mtr-m.5 for 11410929	mtr-u.5 for 120577404	gma-u.5 for 100808084	gma-u.5 for 100795240	ppo-u.5 for 7483111	ppo-u.5 for 7489734	ath-u.5 for AT4G36960	vvi-u.5 for 100247389	sly-u.5 for 101267666	osa-u.5 for 4325826	zma-u.5 for 100193201	zma-u.5 for 100285224

Ortholog

Ortholog ID: 6948

Species

mtr

gma

ppo

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

sbi

bdi

cre

Symbol

Function^*

RNA-binding protein Musashi homolog 2

DAZ-associated protein 1

heterogeneous nuclear ribonucleoprotein 1

uncharacterized LOC7489734

uncharacterized LOC7483111

RNA-binding (RRM/RBD/RNP motifs) family protein

heterogeneous nuclear ribonucleoprotein A/B

uncharacterized LOC100247389

DAZ-associated protein 1

heterogeneous nuclear ribonucleoprotein A2 homolog 2

RNA-binding protein Musashi homolog 2

uncharacterized LOC102620595

uncharacterized LOC101267666

heterogeneous nuclear ribonucleoprotein D-like

heterogeneous nuclear ribonucleoprotein 1

heterogeneous nuclear ribonucleoprotein 27C

28 kDa ribonucleoprotein, chloroplastic

RNA-binding protein Musashi homolog 2

heterogeneous nuclear ribonucleoprotein A2 homolog 2

uncharacterized protein

Coexmap

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Coexpression

Please wait a moment.

KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	6
mtr00510	N-Glycan biosynthesis	3
mtr03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	7
mtr03015	mRNA surveillance pathway	4
mtr03010	Ribosome	2
mtr03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	8
gma03015	mRNA surveillance pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	3
gma03250	Viral life cycle - HIV-1	3
gma03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04144	Endocytosis	3
ppo03083	Polycomb repressive complex	3
ppo03082	ATP-dependent chromatin remodeling	2
ppo04141	Protein processing in endoplasmic reticulum	2
ppo03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04144	Endocytosis	5
ppo03015	mRNA surveillance pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04120	Ubiquitin mediated proteolysis	2
bra01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03040	Spliceosome	4
vvi04141	Protein processing in endoplasmic reticulum	2
vvi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03015	mRNA surveillance pathway	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03015	mRNA surveillance pathway	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03015	mRNA surveillance pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	8
sly03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03015	mRNA surveillance pathway	5
nta03013	Nucleocytoplasmic transport	3
nta03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03015	mRNA surveillance pathway	5
nta03013	Nucleocytoplasmic transport	3
nta03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03022	Basal transcription factors	2
osa03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03015	mRNA surveillance pathway	4
zma03040	Spliceosome	4
zma03013	Nucleocytoplasmic transport	2
zma03050	Proteasome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03015	mRNA surveillance pathway	3
zma03008	Ribosome biogenesis in eukaryotes	2
zma04712	Circadian rhythm - plant	2
zma03050	Proteasome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03015	mRNA surveillance pathway	8
tae04382	Cornified envelope formation	3
tae03013	Nucleocytoplasmic transport	3
tae03040	Spliceosome	3
tae00330	Arginine and proline metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03015	mRNA surveillance pathway	8
tae04382	Cornified envelope formation	3
tae03013	Nucleocytoplasmic transport	3
tae03040	Spliceosome	3
tae03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03050	Proteasome	8
sbi03015	mRNA surveillance pathway	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03050	Proteasome	4
bdi03040	Spliceosome	3
bdi03008	Ribosome biogenesis in eukaryotes	2
bdi03013	Nucleocytoplasmic transport	2
bdi03250	Viral life cycle - HIV-1	2

Expression

Expression pattern

Entrez Gene ID^*

120577404

11410929

100795240

100808084

7489734

7483111

829850

103862517

100247389

107913246

107925197

106445512

106410704

102620595

101267666

102591610

107778564

107788630

4325826

100285224

100193201

123181828

123130390

110433925

100845489

5723512

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 11410929 (mtr-u.5 coexpression data)

Top 50 enrichment test to 11410929 (mtr-u.5 coexpression data)


Species	mtr	gma	ppo	ath	vvi	sly	osa	zma	bdi	hvu	bra	cit	bna	sbi	ghi	sot	nta	cre	tae
Paralog	4	2	2	1	1	1	1	2	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 11410929 (mtr-u.5 coexpression data)

Top 50 enrichment test to 11410929 (mtr-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**