ATTED-II : GeneCoexpression result

Species	Gene	Description
zma-u.5	100194318	XS domain containing protein expressed
zma-r.6	100194318	XS domain containing protein expressed
zma-u.5	103644434	protein SUPPRESSOR OF GENE SILENCING 3
sbi-r.1	8085456	uncharacterized LOC8085456
osa-u.5	4331689	uncharacterized LOC4331689
tae-r.2	123084876	formin-like protein 7
tae-r.2	123093216	fibrous sheath CABYR-binding protein
tae-r.2	123098482	formin-like protein 7
hvu-r.1	123449495	early nodulin-75-like
bdi-r.1	100841373	wiskott-Aldrich syndrome protein family member 2
ath-u.5	AT3G22430	RNA recognition motif XS domain protein
gma-u.5	100805242	uncharacterized LOC100805242
gma-u.5	100779864	protein SUPPRESSOR OF GENE SILENCING 3
sly-u.5	101252627	uncharacterized LOC101252627
bra-r.6	103869037	uncharacterized LOC103869037
vvi-u.5	100259596	uncharacterized LOC100259596
ppo-u.5	18101554	putative proline-rich receptor-like protein kinase PERK11
ppo-u.5	7474208	uncharacterized LOC7474208
mtr-u.5	25485210	uncharacterized LOC25485210
ghi-r.1	107891937	uncharacterized LOC107891937
ghi-r.1	107888885	uncharacterized LOC107888885
bna-r.1	111198057	uncharacterized LOC111198057
bna-r.1	125608776	uncharacterized LOC125608776
bna-r.1	106388241	uncharacterized LOC106388241
sot-r.1	102579696	uncharacterized LOC102579696
cit-r.1	102629231	hypothetical protein
nta-r.1	107791045	uncharacterized LOC107791045
nta-r.1	107784773	uncharacterized LOC107784773

Annotation

functional annotation

KEGG

GO BP

GO:0031047 [list] [network] regulatory ncRNA-mediated gene silencing

(47 genes)

IEA

GO CC

GO MF

Protein

NP_001132828.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 7, nucl 1, mito 1, cysk 1, cyto_nucl 1, nucl_plas 1

(predict for NP_001132828.1)

Subcellular
localization
TargetP

chlo 8

(predict for NP_001132828.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	zma-u.5 for 100194318	zma-r.6 for 100194318	zma-u.5 for 103644434	sbi-r.1 for 8085456	osa-u.5 for 4331689	tae-r.2 for 123084876	tae-r.2 for 123093216	tae-r.2 for 123098482	hvu-r.1 for 123449495	bdi-r.1 for 100841373	ath-u.5 for AT3G22430	gma-u.5 for 100805242	gma-u.5 for 100779864	sly-u.5 for 101252627	bra-r.6 for 103869037	vvi-u.5 for 100259596	ppo-u.5 for 18101554	ppo-u.5 for 7474208	mtr-u.5 for 25485210	ghi-r.1 for 107891937	ghi-r.1 for 107888885	bna-r.1 for 111198057	bna-r.1 for 125608776	bna-r.1 for 106388241	sot-r.1 for 102579696	cit-r.1 for 102629231	nta-r.1 for 107791045	nta-r.1 for 107784773

Ortholog

Ortholog ID: 8956

Species

zma

sbi

osa

tae

hvu

bdi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

Symbol

Function^*

XS domain containing protein expressed

protein SUPPRESSOR OF GENE SILENCING 3

uncharacterized LOC8085456

uncharacterized LOC4331689

formin-like protein 7

fibrous sheath CABYR-binding protein

formin-like protein 7

early nodulin-75-like

wiskott-Aldrich syndrome protein family member 2

RNA recognition motif XS domain protein

uncharacterized LOC100805242

protein SUPPRESSOR OF GENE SILENCING 3

uncharacterized LOC101252627

uncharacterized LOC103869037

uncharacterized LOC100259596

putative proline-rich receptor-like protein kinase PERK11

uncharacterized LOC7474208

uncharacterized LOC25485210

uncharacterized LOC107891937

uncharacterized LOC107888885

uncharacterized LOC111198057

uncharacterized LOC125608776

uncharacterized LOC106388241

uncharacterized LOC102579696

hypothetical protein

uncharacterized LOC107791045

uncharacterized LOC107784773

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03010	Ribosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03082	ATP-dependent chromatin remodeling	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03082	ATP-dependent chromatin remodeling	3
tae03015	mRNA surveillance pathway	2
tae04136	Autophagy - other	2
tae04382	Cornified envelope formation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03082	ATP-dependent chromatin remodeling	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	4
bra03250	Viral life cycle - HIV-1	2
bra04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03040	Spliceosome	4
ghi03015	mRNA surveillance pathway	2
ghi00510	N-Glycan biosynthesis	2
ghi00513	Various types of N-glycan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03040	Spliceosome	4
ghi00510	N-Glycan biosynthesis	2
ghi00513	Various types of N-glycan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04120	Ubiquitin mediated proteolysis	6
bna00310	Lysine degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04120	Ubiquitin mediated proteolysis	6
bna00310	Lysine degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04120	Ubiquitin mediated proteolysis	6
bna00310	Lysine degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	2

Expression

Expression pattern

Entrez Gene ID^*

100194318

103644434

8085456

4331689

123084876

123093216

123098482

123449495

100841373

821813

100805242

100779864

101252627

103869037

100259596

18101554

7474208

25485210

107891937

107888885

111198057

125608776

106388241

102579696

102629231

107791045

107784773

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 100194318 (zma-u.5 coexpression data)

Top 50 enrichment test to 100194318 (zma-u.5 coexpression data)


Species	zma	sbi	osa	tae	hvu	bdi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	3	1	1	3	1	1	1	2	1	1	1	2	1	2	3	1	1	2	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100194318 (zma-u.5 coexpression data)

Top 50 enrichment test to 100194318 (zma-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**