ATTED-II : GeneCoexpression result

Species	Gene	Description
ppo-u.5	7474208	uncharacterized LOC7474208
ppo-r.4	7474208	uncharacterized LOC7474208
ppo-u.5	18101554	putative proline-rich receptor-like protein kinase PERK11
gma-u.5	100805242	uncharacterized LOC100805242
gma-u.5	100779864	protein SUPPRESSOR OF GENE SILENCING 3
mtr-u.5	25485210	uncharacterized LOC25485210
ath-u.5	AT3G22430	RNA recognition motif XS domain protein
vvi-u.5	100259596	uncharacterized LOC100259596
sly-u.5	101252627	uncharacterized LOC101252627
osa-u.5	4331689	uncharacterized LOC4331689
zma-u.5	103644434	protein SUPPRESSOR OF GENE SILENCING 3
zma-u.5	100194318	XS domain containing protein expressed

functional annotation

KEGG

GO BP

GO:0031047 [list] [network] regulatory ncRNA-mediated gene silencing

(66 genes)

IEA

GO CC

GO MF

Protein

XP_002315768.4 [sequence] [blastp]
XP_024467093.2 [sequence] [blastp]
XP_052312298.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 6, nucl 4	(predict for XP_002315768.4)
chlo 6, nucl 4	(predict for XP_024467093.2)
chlo 6, nucl 4	(predict for XP_052312298.1)

Subcellular
localization
TargetP

chlo 9	(predict for XP_002315768.4)
chlo 9	(predict for XP_024467093.2)
chlo 9	(predict for XP_052312298.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ppo-u.5 for 7474208	ppo-r.4 for 7474208	ppo-u.5 for 18101554	gma-u.5 for 100805242	gma-u.5 for 100779864	mtr-u.5 for 25485210	ath-u.5 for AT3G22430	vvi-u.5 for 100259596	sly-u.5 for 101252627	osa-u.5 for 4331689	zma-u.5 for 103644434	zma-u.5 for 100194318

Ortholog ID: 8956

Species

ppo

gma

mtr

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

Function^*

uncharacterized LOC7474208

putative proline-rich receptor-like protein kinase PERK11

protein SUPPRESSOR OF GENE SILENCING 3

uncharacterized LOC100805242

uncharacterized LOC25485210

RNA recognition motif XS domain protein

uncharacterized LOC103869037

uncharacterized LOC100259596

uncharacterized LOC107891937

uncharacterized LOC107888885

uncharacterized LOC106388241

uncharacterized LOC125608776

hypothetical protein

uncharacterized LOC101252627

uncharacterized LOC102579696

uncharacterized LOC107784773

uncharacterized LOC107791045

uncharacterized LOC4331689

XS domain containing protein expressed

protein SUPPRESSOR OF GENE SILENCING 3

formin-like protein 7

early nodulin-75-like

uncharacterized LOC8085456

wiskott-Aldrich syndrome protein family member 2

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	4
bra03250	Viral life cycle - HIV-1	2
bra04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03040	Spliceosome	4
ghi03015	mRNA surveillance pathway	2
ghi00510	N-Glycan biosynthesis	2
ghi00513	Various types of N-glycan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03040	Spliceosome	4
ghi00510	N-Glycan biosynthesis	2
ghi00513	Various types of N-glycan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04120	Ubiquitin mediated proteolysis	6
bna00310	Lysine degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04120	Ubiquitin mediated proteolysis	6
bna00310	Lysine degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03010	Ribosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03082	ATP-dependent chromatin remodeling	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03082	ATP-dependent chromatin remodeling	3

Expression

Expression pattern

Entrez Gene ID^*

7474208

18101554

100779864

100805242

25485210

821813

103869037

100259596

107891937

107888885

106388241

125608776

102629231

101252627

102579696

107784773

107791045

4331689

100194318

103644434

123084876

123098482

123449495

8085456

100841373

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 7474208 (ppo-u.5 coexpression data)

Top 50 enrichment test to 7474208 (ppo-u.5 coexpression data)


Species	ppo	gma	mtr	ath	vvi	sly	osa	zma	bdi	hvu	bra	cit	bna	sbi	ghi	sot	nta	cre	tae
Paralog	3	2	1	1	1	1	1	2	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 7474208 (ppo-u.5 coexpression data)

Top 50 enrichment test to 7474208 (ppo-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**