ATTED-II : GeneCoexpression result

Species	Gene	Description
vvi-u.5	100243705	E3 ubiquitin-protein ligase Os04g0590900
vvi-r.5	100243705	E3 ubiquitin-protein ligase Os04g0590900
vvi-m.5	100243705	E3 ubiquitin-protein ligase Os04g0590900
vvi-u.5	100260525	RING-H2 finger protein ATL51
ath-u.5	AT3G03550	RING/U-box superfamily protein
ath-u.5	AT5G17600	RING/U-box superfamily protein
gma-u.5	100809014	RING-H2 finger protein ATL52
ppo-u.5	18094156	E3 ubiquitin-protein ligase Os04g0590900
ppo-u.5	7493878	RING-H2 finger protein ATL52
mtr-u.5	11429516	RING-H2 finger protein ATL52
mtr-u.5	11419509	putative RING-H2 finger protein ATL53
sly-u.5	101265935	RING-H2 finger protein ATL51-like
sly-u.5	101260465	RING-H2 finger protein ATL52
sly-u.5	101255238	RING-H2 finger protein ATL51
osa-u.5	4336823	E3 ubiquitin-protein ligase Os04g0590900-like
osa-u.5	4330383	E3 ubiquitin-protein ligase Os04g0590900-like
zma-u.5	103627577	E3 ubiquitin-protein ligase Os04g0590900
zma-u.5	100217100	uncharacterized LOC100217100

Annotation

functional annotation

KEGG

GO BP

GO:0016567 [list] [network] protein ubiquitination

(272 genes)

IEA

GO CC

GO MF

GO:0016740 [list] [network] transferase activity

(3494 genes)

IEA

Protein

XP_002277896.1 [sequence] [blastp]

Subcellular
localization
wolf

extr 3, chlo 1, nucl 1, E.R. 1, cyto 1, mito 1, plas 1, vacu 1, cysk_nucl 1, mito_plas 1, cyto_plas 1

(predict for XP_002277896.1)

Subcellular
localization
TargetP

other 6

(predict for XP_002277896.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	vvi-u.5 for 100243705	vvi-r.5 for 100243705	vvi-m.5 for 100243705	vvi-u.5 for 100260525	ath-u.5 for AT3G03550	ath-u.5 for AT5G17600	gma-u.5 for 100809014	ppo-u.5 for 18094156	ppo-u.5 for 7493878	mtr-u.5 for 11429516	mtr-u.5 for 11419509	sly-u.5 for 101265935	sly-u.5 for 101260465	sly-u.5 for 101255238	osa-u.5 for 4336823	osa-u.5 for 4330383	zma-u.5 for 103627577	zma-u.5 for 100217100

Ortholog

Ortholog ID: 2409

Species

vvi

ath

gma

bra

ppo

mtr

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

Function^*

RING-H2 finger protein ATL51

E3 ubiquitin-protein ligase Os04g0590900

RING/U-box superfamily protein

RING-H2 finger protein ATL52

RING-H2 finger protein ATL51-like

RING-H2 finger protein ATL52

E3 ubiquitin-protein ligase Os04g0590900

putative RING-H2 finger protein ATL53

RING-H2 finger protein ATL52

E3 ubiquitin-protein ligase Os04g0590900

RING-H2 finger protein ATL52

RING-H2 finger protein ATL51-like

RING-H2 finger protein ATL52-like

E3 ubiquitin-protein ligase Os04g0590900-like

RING-H2 finger protein ATL51-like

RING-H2 finger protein ATL51

RING-H2 finger protein ATL52-like

RING-H2 finger protein ATL51-like

RING-H2 finger protein ATL52-like

E3 ubiquitin-protein ligase Os04g0590900-like

uncharacterized LOC100217100

E3 ubiquitin-protein ligase Os04g0590900

E3 ubiquitin-protein ligase Os04g0590900-like

E3 ubiquitin-protein ligase Os04g0590900

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00051	Fructose and mannose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00130	Ubiquinone and other terpenoid-quinone biosynthesis	2
bra00350	Tyrosine metabolism	2
bra00360	Phenylalanine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04075	Plant hormone signal transduction	5
bra04016	MAPK signaling pathway - plant	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04120	Ubiquitin mediated proteolysis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04120	Ubiquitin mediated proteolysis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00400	Phenylalanine, tyrosine and tryptophan biosynthesis	7
bna01230	Biosynthesis of amino acids	7
bna00940	Phenylpropanoid biosynthesis	2
bna00941	Flavonoid biosynthesis	2
bna00945	Stilbenoid, diarylheptanoid and gingerol biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit01212	Fatty acid metabolism	2
cit00062	Fatty acid elongation	2
cit00561	Glycerolipid metabolism	2
cit00564	Glycerophospholipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00940	Phenylpropanoid biosynthesis	2
sbi00670	One carbon pool by folate	2
sbi01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi01200	Carbon metabolism	3
bdi00010	Glycolysis / Gluconeogenesis	2
bdi00710	Carbon fixation by Calvin cycle	2
bdi01230	Biosynthesis of amino acids	2

Expression

Expression pattern

Entrez Gene ID^*

100260525

100243705

831626

821237

100809014

103859002

103856257

7491862

11419509

11429516

107946754

107946836

106386510

106443874

102614079

102624382

101265935

101255238

102600372

102590413

107827464

107785760

4330383

4336823

100217100

103627577

123137832

123190361

123430852

8060470

8073894

100832041

100835994

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 100243705 (vvi-u.5 coexpression data)

Top 50 enrichment test to 100243705 (vvi-u.5 coexpression data)


Species	vvi	ath	gma	ppo	mtr	sly	osa	zma	bdi	hvu	bra	cit	bna	sbi	ghi	sot	nta	cre	tae
Paralog	4	2	1	2	2	3	2	2	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100243705 (vvi-u.5 coexpression data)

Top 50 enrichment test to 100243705 (vvi-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**