ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
hvu-r.1	123430852	E3 ubiquitin-protein ligase Os04g0590900-like
hvu-r.1	123401955	E3 ubiquitin-protein ligase Os04g0590900-like
tae-r.2	123190361	E3 ubiquitin-protein ligase Os04g0590900
tae-r.2	123137832	E3 ubiquitin-protein ligase Os04g0590900
tae-r.2	123054505	E3 ubiquitin-protein ligase Os04g0590900
bdi-r.1	100835994	E3 ubiquitin-protein ligase Os04g0590900
bdi-r.1	100832041	E3 ubiquitin-protein ligase Os04g0590900
osa-u.5	4330383	E3 ubiquitin-protein ligase Os04g0590900-like
osa-u.5	4336823	E3 ubiquitin-protein ligase Os04g0590900-like
zma-u.5	103627577	E3 ubiquitin-protein ligase Os04g0590900
zma-u.5	100217100	uncharacterized LOC100217100
sbi-r.1	8060470	E3 ubiquitin-protein ligase Os04g0590900
sbi-r.1	8073894	E3 ubiquitin-protein ligase Os04g0590900
ath-u.5	AT3G03550	RING/U-box superfamily protein
ath-u.5	AT5G17600	RING/U-box superfamily protein
gma-u.5	100809014	RING-H2 finger protein ATL52
gma-u.5	100792799	RING-H2 finger protein ATL52
gma-u.5	100792267	putative E3 ubiquitin-protein ligase
sly-u.5	101255238	RING-H2 finger protein ATL51
sly-u.5	101260465	RING-H2 finger protein ATL52
sly-u.5	101265935	RING-H2 finger protein ATL51-like
bra-r.6	103856257	RING-H2 finger protein ATL52
bra-r.6	103859002	RING-H2 finger protein ATL51-like
bra-r.6	103844257	RING-H2 finger protein ATL51
vvi-u.5	100260525	RING-H2 finger protein ATL51
vvi-u.5	100243705	E3 ubiquitin-protein ligase Os04g0590900
ppo-u.5	7491862	E3 ubiquitin-protein ligase Os04g0590900
ppo-u.5	18094156	E3 ubiquitin-protein ligase Os04g0590900
mtr-u.5	11429516	RING-H2 finger protein ATL52
mtr-u.5	11419509	putative RING-H2 finger protein ATL53
ghi-r.1	107946754	E3 ubiquitin-protein ligase Os04g0590900
ghi-r.1	107893108	RING-H2 finger protein ATL52
ghi-r.1	107937758	RING-H2 finger protein ATL52
bna-r.1	125584123	RING-H2 finger protein ATL52-like
bna-r.1	106386510	RING-H2 finger protein ATL52
bna-r.1	106387303	RING-H2 finger protein ATL51
sot-r.1	102600372	RING-H2 finger protein ATL52-like
sot-r.1	102598642	RING-H2 finger protein ATL51-like
sot-r.1	102590413	RING-H2 finger protein ATL51-like
cit-r.1	102624382	E3 ubiquitin-protein ligase Os04g0590900-like
cit-r.1	102614079	RING-H2 finger protein ATL52-like
nta-r.1	107782602	RING-H2 finger protein ATL52-like
nta-r.1	107827464	RING-H2 finger protein ATL52-like
nta-r.1	107815272	uncharacterized LOC107815272

Top 50 coexpressed genes to 123430852 (hvu-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 123430852 (hvu-r.1 coexpression data)

CoexMap"123430852"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0016567 [list] [network] protein ubiquitination

(478 genes)

IEA

GO CC

GO MF

GO:0016740 [list] [network] transferase activity

(4101 genes)

IEA

Protein

XP_044970624.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 2, extr 2, cysk_nucl 1, chlo 1, cyto 1, mito 1, plas 1, vacu 1, E.R. 1, E.R._vacu 1, E.R._plas 1, mito_plas 1, cyto_E.R. 1, cyto_plas 1

(predict for XP_044970624.1)

Subcellular
localization
TargetP

other 9

(predict for XP_044970624.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	hvu-r.1 for 123430852	hvu-r.1 for 123401955	tae-r.2 for 123190361	tae-r.2 for 123137832	tae-r.2 for 123054505	bdi-r.1 for 100835994	bdi-r.1 for 100832041	osa-u.5 for 4330383	osa-u.5 for 4336823	zma-u.5 for 103627577	zma-u.5 for 100217100	sbi-r.1 for 8060470	sbi-r.1 for 8073894	ath-u.5 for AT3G03550	ath-u.5 for AT5G17600	gma-u.5 for 100809014	gma-u.5 for 100792799	gma-u.5 for 100792267	sly-u.5 for 101255238	sly-u.5 for 101260465	sly-u.5 for 101265935	bra-r.6 for 103856257	bra-r.6 for 103859002	bra-r.6 for 103844257	vvi-u.5 for 100260525	vvi-u.5 for 100243705	ppo-u.5 for 7491862	ppo-u.5 for 18094156	mtr-u.5 for 11429516	mtr-u.5 for 11419509	ghi-r.1 for 107946754	ghi-r.1 for 107893108	ghi-r.1 for 107937758	bna-r.1 for 125584123	bna-r.1 for 106386510	bna-r.1 for 106387303	sot-r.1 for 102600372	sot-r.1 for 102598642	sot-r.1 for 102590413	cit-r.1 for 102624382	cit-r.1 for 102614079	nta-r.1 for 107782602	nta-r.1 for 107827464	nta-r.1 for 107815272

Ortholog

Ortholog ID: 2409

Species

hvu

tae

bdi

osa

zma

sbi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

Symbol

Function^*

E3 ubiquitin-protein ligase Os04g0590900-like

E3 ubiquitin-protein ligase Os04g0590900

E3 ubiquitin-protein ligase Os04g0590900-like

E3 ubiquitin-protein ligase Os04g0590900

uncharacterized LOC100217100

E3 ubiquitin-protein ligase Os04g0590900

RING/U-box superfamily protein

RING-H2 finger protein ATL52

RING-H2 finger protein ATL51

RING-H2 finger protein ATL52

RING-H2 finger protein ATL51-like

RING-H2 finger protein ATL52

RING-H2 finger protein ATL51-like

RING-H2 finger protein ATL51

E3 ubiquitin-protein ligase Os04g0590900

RING-H2 finger protein ATL52

putative RING-H2 finger protein ATL53

E3 ubiquitin-protein ligase Os04g0590900

RING-H2 finger protein ATL52

E3 ubiquitin-protein ligase Os04g0590900

RING-H2 finger protein ATL52

RING-H2 finger protein ATL51

RING-H2 finger protein ATL51-like

RING-H2 finger protein ATL52-like

RING-H2 finger protein ATL51-like

E3 ubiquitin-protein ligase Os04g0590900-like

RING-H2 finger protein ATL52-like

E3 ubiquitin-protein ligase Os04g0590900-like

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi01200	Carbon metabolism	3
bdi00010	Glycolysis / Gluconeogenesis	2
bdi00710	Carbon fixation by Calvin cycle	2
bdi01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00940	Phenylpropanoid biosynthesis	2
sbi00670	One carbon pool by folate	2
sbi01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00051	Fructose and mannose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04075	Plant hormone signal transduction	5
bra04016	MAPK signaling pathway - plant	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00130	Ubiquinone and other terpenoid-quinone biosynthesis	2
bra00350	Tyrosine metabolism	2
bra00360	Phenylalanine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04075	Plant hormone signal transduction	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04075	Plant hormone signal transduction	4
ppo04016	MAPK signaling pathway - plant	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04120	Ubiquitin mediated proteolysis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04120	Ubiquitin mediated proteolysis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00400	Phenylalanine, tyrosine and tryptophan biosynthesis	3
bna01230	Biosynthesis of amino acids	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00400	Phenylalanine, tyrosine and tryptophan biosynthesis	7
bna01230	Biosynthesis of amino acids	7
bna00940	Phenylpropanoid biosynthesis	2
bna00941	Flavonoid biosynthesis	2
bna00945	Stilbenoid, diarylheptanoid and gingerol biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit01212	Fatty acid metabolism	2
cit00062	Fatty acid elongation	2
cit00561	Glycerolipid metabolism	2
cit00564	Glycerophospholipid metabolism	2

Expression

Expression pattern

Entrez Gene ID^*

123430852

123401955

123190361

123137832

123054505

100835994

100832041

4330383

4336823

103627577

100217100

8060470

8073894

821237

831626

100809014

102660020

101255238

101260465

101265935

103856257

103859002

103844257

100260525

100243705

7491862

18094156

11429516

11419509

107946754

107893108

107946836

106386510

106432871

106443874

102600372

102598642

102590413

102624382

102614079

107827464

107799393

107785760

The preparation time of this page was 0.4 [sec].


Species	hvu	tae	bdi	osa	zma	sbi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	2	3	2	2	2	2	2	3	3	3	2	2	2	3	3	3	2	3	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 123430852 (hvu-r.1 coexpression data)

Top 50 enrichment test to 123430852 (hvu-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**