Select Species**


OK


Orthologous genes in OrthoFinder**

Species Gene Description
 vvi-u.5   100254325   pentatricopeptide repeat-containing protein At5g52850, chloroplastic 
 vvi-r.5   100254325   pentatricopeptide repeat-containing protein At5g52850, chloroplastic 
 ath-u.5   AT5G52850   Pentatricopeptide repeat (PPR) superfamily protein 
 gma-u.5   100791770   pentatricopeptide repeat-containing protein At5g52850, chloroplastic 
 bra-r.6   103844759   pentatricopeptide repeat-containing protein At5g52850, chloroplastic 
 mtr-u.5   11414844   pentatricopeptide repeat-containing protein At5g52850, chloroplastic 
 ghi-r.1   107944431   pentatricopeptide repeat-containing protein At5g52850, chloroplastic 
 bna-r.1   106442854   pentatricopeptide repeat-containing protein At5g52850, chloroplastic-like 
 osa-u.5   4334879   pentatricopeptide repeat-containing protein At5g52850, chloroplastic 
 zma-u.5   103644348   pentatricopeptide repeat-containing protein At5g52850, chloroplastic 
 tae-r.2   123124014   pentatricopeptide repeat-containing protein At5g52850, chloroplastic 
 tae-r.2   123114518   pentatricopeptide repeat-containing protein At5g52850, chloroplastic 
 hvu-r.1   123397470   pentatricopeptide repeat-containing protein At5g52850, chloroplastic-like 
 bdi-r.1   100837316   pentatricopeptide repeat-containing protein At5g52850, chloroplastic 

close


Top 50 coexpressed genes to 100254325 (vvi-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

close

close

Top 50 enrichment test to 100254325 (vvi-u.5 coexpression data)

CoexMap"100254325"


vviLOC100254325 | Entrez gene ID : 100254325      
Species vvi ath gma bra mtr ghi bna osa zma tae hvu bdi nta sot cit ppo sly sbi cre
Paralog 2 1 1 1 1 1 1 1 1 2 1 1 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009451 [list] [network] RNA modification  (500 genes)  IEA  
GO CC
GO MF
GO:0008270 [list] [network] zinc ion binding  (811 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (1286 genes)  IEA  
GO:0005515 [list] [network] protein binding  (4232 genes)  IEA  
Protein XP_002274427.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  nucl 2,  cyto 1,  mito 1,  cysk_nucl 1,  nucl_plas 1  (predict for XP_002274427.1)
Subcellular
localization
TargetP
other 6  (predict for XP_002274427.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

vvi-u.5
for
100254325
vvi-r.5
for
100254325
ath-u.5
for
AT5G52850
gma-u.5
for
100791770
bra-r.6
for
103844759
mtr-u.5
for
11414844
ghi-r.1
for
107944431
bna-r.1
for
106442854
osa-u.5
for
4334879
zma-u.5
for
103644348
tae-r.2
for
123124014
tae-r.2
for
123114518
hvu-r.1
for
123397470
bdi-r.1
for
100837316


Ortholog ID: 13200
Species vvi ath gma bra mtr ghi bna osa zma tae tae hvu bdi
Symbol LOC100254325 AT5G52850 LOC100791770 LOC103844759 LOC11414844 LOC107944431 LOC106442854 LOC4334879 LOC103644348 LOC123124014 LOC123114518 LOC123397470 LOC100837316
Function* pentatricopeptide repeat-containing protein At5g52850, chloroplastic Pentatricopeptide repeat (PPR) superfamily protein pentatricopeptide repeat-containing protein At5g52850, chloroplastic pentatricopeptide repeat-containing protein At5g52850, chloroplastic pentatricopeptide repeat-containing protein At5g52850, chloroplastic pentatricopeptide repeat-containing protein At5g52850, chloroplastic pentatricopeptide repeat-containing protein At5g52850, chloroplastic-like pentatricopeptide repeat-containing protein At5g52850, chloroplastic pentatricopeptide repeat-containing protein At5g52850, chloroplastic pentatricopeptide repeat-containing protein At5g52850, chloroplastic pentatricopeptide repeat-containing protein At5g52850, chloroplastic pentatricopeptide repeat-containing protein At5g52850, chloroplastic-like pentatricopeptide repeat-containing protein At5g52850, chloroplastic
Coexmap

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.
Coexpression

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.
KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100254325 835362 100791770 103844759 11414844 107944431 106442854 4334879 103644348 123124014 123114518 123397470 100837316
The preparation time of this page was 2.1 [sec].