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Orthologous genes in OrthoFinder**

Species Gene Description
 vvi-u.5   100255649   pentatricopeptide repeat-containing protein At1g62350 
 vvi-r.5   100255649   pentatricopeptide repeat-containing protein At1g62350 
 ath-u.5   AT5G09315   vacuolar sorting protein 9 domain protein 
 ppo-u.5   7463355   protein THYLAKOID ASSEMBLY 8, chloroplastic 
 sly-u.5   101253840   pentatricopeptide repeat-containing protein At1g62350 
 osa-u.5   4336149   protein THYLAKOID ASSEMBLY 8, chloroplastic 
 zma-u.5   103646322   protein THYLAKOID ASSEMBLY 8, chloroplastic 

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Top 50 coexpressed genes to 100255649 (vvi-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100255649 (vvi-u.5 coexpression data)

CoexMap"100255649"


vviLOC100255649 | Entrez gene ID : 100255649      
Species vvi ath ppo sly osa zma bdi mtr bra hvu cit gma bna sbi ghi sot nta cre tae
Paralog 2 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0000373 [list] [network] Group II intron splicing  (8 genes)  IEA  
GO:0009658 [list] [network] chloroplast organization  (85 genes)  IEA  
GO CC
GO MF
GO:0003723 [list] [network] RNA binding  (1286 genes)  IEA  
GO:0005515 [list] [network] protein binding  (4232 genes)  IEA  
Protein XP_002279994.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  mito 1,  cyto 1,  plas 1,  cysk 1,  chlo_mito 1,  cyto_mito 1,  cysk_plas 1,  cyto_plas 1  (predict for XP_002279994.2)
Subcellular
localization
TargetP
other 4  (predict for XP_002279994.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

vvi-u.5
for
100255649
vvi-r.5
for
100255649
ath-u.5
for
AT5G09315
ppo-u.5
for
7463355
sly-u.5
for
101253840
osa-u.5
for
4336149
zma-u.5
for
103646322


Ortholog ID: 11829
Species vvi ath bra ppo ghi ghi bna bna cit sly sot nta nta osa zma tae hvu sbi bdi
Symbol LOC100255649 AT5G09315 LOC108870224 LOC7463355 LOC107908976 LOC107940754 LOC125593178 LOC111201533 LOC102612092 LOC101253840 LOC102605053 LOC107783783 LOC107832516 LOC4336149 LOC103646322 LOC123189515 LOC123430418 LOC8073575 LOC100840687
Function* pentatricopeptide repeat-containing protein At1g62350 vacuolar sorting protein 9 domain protein pentatricopeptide repeat-containing protein At1g62350 protein THYLAKOID ASSEMBLY 8, chloroplastic pentatricopeptide repeat-containing protein At1g62350 pentatricopeptide repeat-containing protein At1g62350 pentatricopeptide repeat-containing protein At1g62350-like pentatricopeptide repeat-containing protein At1g62350 protein THYLAKOID ASSEMBLY 8, chloroplastic-like pentatricopeptide repeat-containing protein At1g62350 pentatricopeptide repeat-containing protein At1g62350-like pentatricopeptide repeat-containing protein At1g62350-like pentatricopeptide repeat-containing protein At1g62350-like protein THYLAKOID ASSEMBLY 8, chloroplastic protein THYLAKOID ASSEMBLY 8, chloroplastic protein THYLAKOID ASSEMBLY 8, chloroplastic protein THYLAKOID ASSEMBLY 8, chloroplastic-like pentatricopeptide repeat-containing protein At1g62350 pentatricopeptide repeat-containing protein At1g62350
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 2
nta03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04141 Protein processing in endoplasmic reticulum 2
zma01240 Biosynthesis of cofactors 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100255649 28721089 108870224 7463355 107908976 107940754 125593178 111201533 102612092 101253840 102605053 107783783 107832516 4336149 103646322 123189515 123430418 8073575 100840687
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