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Orthologous genes in OrthoFinder**

Species Gene Description
 cit-r.1   102612092   protein THYLAKOID ASSEMBLY 8, chloroplastic-like 
 ath-u.5   AT5G09315   vacuolar sorting protein 9 domain protein 
 bra-r.6   108870224   pentatricopeptide repeat-containing protein At1g62350 
 ghi-r.1   107908976   pentatricopeptide repeat-containing protein At1g62350 
 ghi-r.1   107940754   pentatricopeptide repeat-containing protein At1g62350 
 bna-r.1   111201533   pentatricopeptide repeat-containing protein At1g62350 
 bna-r.1   125593178   pentatricopeptide repeat-containing protein At1g62350-like 
 vvi-u.5   100255649   pentatricopeptide repeat-containing protein At1g62350 
 ppo-u.5   7463355   protein THYLAKOID ASSEMBLY 8, chloroplastic 
 sly-u.5   101253840   pentatricopeptide repeat-containing protein At1g62350 
 sot-r.1   102605053   pentatricopeptide repeat-containing protein At1g62350-like 
 nta-r.1   107783783   pentatricopeptide repeat-containing protein At1g62350-like 
 nta-r.1   107832516   pentatricopeptide repeat-containing protein At1g62350-like 
 osa-u.5   4336149   protein THYLAKOID ASSEMBLY 8, chloroplastic 
 zma-u.5   103646322   protein THYLAKOID ASSEMBLY 8, chloroplastic 
 tae-r.2   123189515   protein THYLAKOID ASSEMBLY 8, chloroplastic 
 hvu-r.1   123430418   protein THYLAKOID ASSEMBLY 8, chloroplastic-like 
 sbi-r.1   8073575   pentatricopeptide repeat-containing protein At1g62350 
 bdi-r.1   100840687   pentatricopeptide repeat-containing protein At1g62350 

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Top 50 coexpressed genes to 102612092 (cit-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 102612092 (cit-r.1 coexpression data)

CoexMap"102612092"


citLOC102612092 | Entrez gene ID : 102612092    
Species cit ath bra ghi bna vvi ppo sly sot nta osa zma tae hvu sbi bdi gma mtr cre
Paralog 1 1 1 2 2 1 1 1 1 2 1 1 1 1 1 1 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0000373 [list] [network] Group II intron splicing  (9 genes)  IEA  
GO:0009658 [list] [network] chloroplast organization  (66 genes)  IEA  
GO CC
GO MF
GO:0003723 [list] [network] RNA binding  (1117 genes)  IEA  
GO:0005515 [list] [network] protein binding  (3939 genes)  IEA  
Protein XP_006486588.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  cyto 3,  mito 1,  nucl 1,  cyto_mito 1,  cyto_pero 1,  cyto_E.R. 1,  cyto_plas 1  (predict for XP_006486588.2)
Subcellular
localization
TargetP
other 4  (predict for XP_006486588.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cit-r.1
for
102612092
ath-u.5
for
AT5G09315
bra-r.6
for
108870224
ghi-r.1
for
107908976
ghi-r.1
for
107940754
bna-r.1
for
111201533
bna-r.1
for
125593178
vvi-u.5
for
100255649
ppo-u.5
for
7463355
sly-u.5
for
101253840
sot-r.1
for
102605053
nta-r.1
for
107783783
nta-r.1
for
107832516
osa-u.5
for
4336149
zma-u.5
for
103646322
tae-r.2
for
123189515
hvu-r.1
for
123430418
sbi-r.1
for
8073575
bdi-r.1
for
100840687


Ortholog ID: 11829
Species cit ath bra ghi ghi bna bna vvi ppo sly sot nta nta osa zma tae hvu sbi bdi
Symbol LOC102612092 AT5G09315 LOC108870224 LOC107908976 LOC107940754 LOC111201533 LOC125593178 LOC100255649 LOC7463355 LOC101253840 LOC102605053 LOC107783783 LOC107832516 LOC4336149 LOC103646322 LOC123189515 LOC123430418 LOC8073575 LOC100840687
Function* protein THYLAKOID ASSEMBLY 8, chloroplastic-like vacuolar sorting protein 9 domain protein pentatricopeptide repeat-containing protein At1g62350 pentatricopeptide repeat-containing protein At1g62350 pentatricopeptide repeat-containing protein At1g62350 pentatricopeptide repeat-containing protein At1g62350 pentatricopeptide repeat-containing protein At1g62350-like pentatricopeptide repeat-containing protein At1g62350 protein THYLAKOID ASSEMBLY 8, chloroplastic pentatricopeptide repeat-containing protein At1g62350 pentatricopeptide repeat-containing protein At1g62350-like pentatricopeptide repeat-containing protein At1g62350-like pentatricopeptide repeat-containing protein At1g62350-like protein THYLAKOID ASSEMBLY 8, chloroplastic protein THYLAKOID ASSEMBLY 8, chloroplastic protein THYLAKOID ASSEMBLY 8, chloroplastic protein THYLAKOID ASSEMBLY 8, chloroplastic-like pentatricopeptide repeat-containing protein At1g62350 pentatricopeptide repeat-containing protein At1g62350
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 2
nta03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04141 Protein processing in endoplasmic reticulum 2
zma01240 Biosynthesis of cofactors 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 102612092 28721089 108870224 107908976 107940754 111201533 125593178 100255649 7463355 101253840 102605053 107783783 107832516 4336149 103646322 123189515 123430418 8073575 100840687
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