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Orthologous genes in OrthoFinder**

Species Gene Description
 vvi-u.5   100260076   DNA topoisomerase 3-beta 
 vvi-r.5   100260076   DNA topoisomerase 3-beta 
 ath-u.5   AT2G32000   DNA topoisomerase, type IA, core 
 gma-u.5   100791807   DNA topoisomerase 3-beta 
 bra-r.6   103857411   DNA topoisomerase 3-beta 
 ppo-u.5   7462031   DNA topoisomerase 3-beta 
 mtr-u.5   11437293   DNA topoisomerase 3-beta 
 ghi-r.1   107914775   DNA topoisomerase 3-beta 
 bna-r.1   106387978   DNA topoisomerase 3-beta 
 bna-r.1   106437702   DNA topoisomerase 3-beta 
 cit-r.1   102617834   DNA topoisomerase 3-beta 
 sly-u.5   101268032   DNA topoisomerase 3-beta 
 sot-r.1   102599971   DNA topoisomerase 3-beta 
 nta-r.1   107818748   DNA topoisomerase 3-beta 
 nta-r.1   107816718   DNA topoisomerase 3-beta 
 osa-u.5   4347482   DNA topoisomerase 3-beta-like 
 zma-u.5   100383032   DNA topoisomerase 3-beta 
 tae-r.2   123112523   DNA topoisomerase 3-beta 
 tae-r.2   123104259   DNA topoisomerase 3-beta 
 tae-r.2   123122023   DNA topoisomerase 3-beta 
 hvu-r.1   123399647   DNA topoisomerase 3-beta 
 sbi-r.1   8057257   DNA topoisomerase 3-beta 
 bdi-r.1   100836701   DNA topoisomerase 3-beta 
 cre-r.1   CHLRE_17g725100v5   uncharacterized protein 

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Top 50 coexpressed genes to 100260076 (vvi-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100260076 (vvi-u.5 coexpression data)

CoexMap"100260076"


vviLOC100260076 | Entrez gene ID : 100260076      
Species vvi ath gma bra ppo mtr ghi bna cit sly sot nta osa zma tae hvu sbi bdi cre
Paralog 2 1 1 1 1 1 1 2 1 1 1 2 1 1 3 1 1 1 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG vvi03440 [list] [network] Homologous recombination (47 genes)
vvi03460 [list] [network] Fanconi anemia pathway (40 genes)
GO BP
GO:0006265 [list] [network] DNA topological change  (12 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (2597 genes)  IEA  
GO MF
GO:0003917 [list] [network] DNA topoisomerase type I (single strand cut, ATP-independent) activity  (6 genes)  IEA  
GO:0003677 [list] [network] DNA binding  (1602 genes)  IEA  
Protein XP_010650401.1 [sequence] [blastp]
XP_010650402.1 [sequence] [blastp]
XP_059593002.1 [sequence] [blastp]
XP_059593003.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  nucl 3,  mito 1,  cyto_mito 1,  cyto 1,  plas 1,  cysk 1,  cysk_plas 1,  cyto_plas 1  (predict for XP_010650401.1)
cyto 4,  nucl 3,  chlo 1,  plas 1,  cysk_plas 1  (predict for XP_010650402.1)
nucl 4,  cyto 4,  vacu 1  (predict for XP_059593002.1)
cyto 7,  chlo 1,  nucl 1  (predict for XP_059593003.1)
Subcellular
localization
TargetP
chlo 3  (predict for XP_010650401.1)
other 8  (predict for XP_010650402.1)
other 8  (predict for XP_059593002.1)
other 9  (predict for XP_059593003.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

vvi-u.5
for
100260076
vvi-r.5
for
100260076
ath-u.5
for
AT2G32000
gma-u.5
for
100791807
bra-r.6
for
103857411
ppo-u.5
for
7462031
mtr-u.5
for
11437293
ghi-r.1
for
107914775
bna-r.1
for
106387978
bna-r.1
for
106437702
cit-r.1
for
102617834
sly-u.5
for
101268032
sot-r.1
for
102599971
nta-r.1
for
107818748
nta-r.1
for
107816718
osa-u.5
for
4347482
zma-u.5
for
100383032
tae-r.2
for
123112523
tae-r.2
for
123104259
tae-r.2
for
123122023
hvu-r.1
for
123399647
sbi-r.1
for
8057257
bdi-r.1
for
100836701
cre-r.1
for
CHLRE_17g725100v5


Ortholog ID: 11258
Species vvi ath gma bra ppo mtr ghi bna bna cit sly sot nta nta osa zma tae tae tae hvu sbi bdi cre
Symbol LOC100260076 AT2G32000 LOC100791807 LOC103857411 LOC7462031 LOC11437293 LOC107914775 LOC106387978 LOC106437702 LOC102617834 LOC101268032 LOC102599971 LOC107818748 LOC107816718 LOC4347482 LOC100383032 LOC123112523 LOC123104259 LOC123122023 LOC123399647 LOC8057257 LOC100836701 CHLRE_17g725100v5
Function* DNA topoisomerase 3-beta DNA topoisomerase, type IA, core DNA topoisomerase 3-beta DNA topoisomerase 3-beta DNA topoisomerase 3-beta DNA topoisomerase 3-beta DNA topoisomerase 3-beta DNA topoisomerase 3-beta DNA topoisomerase 3-beta DNA topoisomerase 3-beta DNA topoisomerase 3-beta DNA topoisomerase 3-beta DNA topoisomerase 3-beta DNA topoisomerase 3-beta DNA topoisomerase 3-beta-like DNA topoisomerase 3-beta DNA topoisomerase 3-beta DNA topoisomerase 3-beta DNA topoisomerase 3-beta DNA topoisomerase 3-beta DNA topoisomerase 3-beta DNA topoisomerase 3-beta uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03440 Homologous recombination 3
vvi03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03440 Homologous recombination 2
gma03040 Spliceosome 2
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03013 Nucleocytoplasmic transport 3
bra03440 Homologous recombination 2
bra03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03013 Nucleocytoplasmic transport 3
mtr03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03440 Homologous recombination 2
ghi03460 Fanconi anemia pathway 2
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03013 Nucleocytoplasmic transport 5
bna03015 mRNA surveillance pathway 4
bna03440 Homologous recombination 2
bna03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 4
bna03013 Nucleocytoplasmic transport 2
bna03440 Homologous recombination 2
bna03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 2
sly03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 4
sot03013 Nucleocytoplasmic transport 3
sot03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03440 Homologous recombination 2
nta03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04075 Plant hormone signal transduction 3
nta03440 Homologous recombination 2
nta03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03440 Homologous recombination 3
tae03460 Fanconi anemia pathway 3
tae03082 ATP-dependent chromatin remodeling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03440 Homologous recombination 3
tae03460 Fanconi anemia pathway 3
tae03082 ATP-dependent chromatin remodeling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 6
tae03440 Homologous recombination 3
tae03460 Fanconi anemia pathway 3
tae03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03013 Nucleocytoplasmic transport 3
hvu03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre04141 Protein processing in endoplasmic reticulum 8
cre00510 N-Glycan biosynthesis 5
cre00513 Various types of N-glycan biosynthesis 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100260076 817760 100791807 103857411 7462031 11437293 107914775 106387978 106437702 102617834 101268032 102599971 107818748 107816718 4347482 100383032 123112523 123104259 123122023 123399647 8057257 100836701 5722763
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