ATTED-II : GeneCoexpression result

Species	Gene	Description
osa-u.5	4347482	DNA topoisomerase 3-beta-like
osa-r.6	4347482	DNA topoisomerase 3-beta-like
osa-m.8	4347482	DNA topoisomerase 3-beta-like
osa-e.1	4347482	DNA topoisomerase 3-beta-like
zma-u.5	100383032	DNA topoisomerase 3-beta
ath-u.5	AT2G32000	DNA topoisomerase, type IA, core
gma-u.5	100791807	DNA topoisomerase 3-beta
sly-u.5	101268032	DNA topoisomerase 3-beta
vvi-u.5	100260076	DNA topoisomerase 3-beta
ppo-u.5	7462031	DNA topoisomerase 3-beta
mtr-u.5	11437293	DNA topoisomerase 3-beta

functional annotation

KEGG

osa03440 [list] [network] Homologous recombination (57 genes)

osa03460 [list] [network] Fanconi anemia pathway (39 genes)

GO BP

GO:0006265 [list] [network] DNA topological change

(12 genes)

IEA

GO CC

GO:0005634 [list] [network] nucleus

(3003 genes)

IEA

GO MF

GO:0003917 [list] [network] DNA topoisomerase type I (single strand cut, ATP-independent) activity	(5 genes)	IEA
GO:0003677 [list] [network] DNA binding	(1843 genes)	IEA

Protein

NP_001409731.1 [sequence] [blastp]
XP_066159975.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 6, nucl 1, cyto 1, cyto_nucl 1	(predict for NP_001409731.1)
chlo 6, nucl 1, cyto 1, cyto_nucl 1	(predict for XP_066159975.1)

Subcellular
localization
TargetP

chlo 3, other 3	(predict for NP_001409731.1)
chlo 3, other 3	(predict for XP_066159975.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	osa-u.5 for 4347482	osa-r.6 for 4347482	osa-m.8 for 4347482	osa-e.1 for 4347482	zma-u.5 for 100383032	ath-u.5 for AT2G32000	gma-u.5 for 100791807	sly-u.5 for 101268032	vvi-u.5 for 100260076	ppo-u.5 for 7462031	mtr-u.5 for 11437293

Ortholog ID: 11258

Species

osa

tae

hvu

bdi

zma

sbi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

Function^*

DNA topoisomerase 3-beta-like

DNA topoisomerase 3-beta

DNA topoisomerase, type IA, core

DNA topoisomerase 3-beta

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03440	Homologous recombination	3
tae03460	Fanconi anemia pathway	3
tae03082	ATP-dependent chromatin remodeling	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03440	Homologous recombination	3
tae03460	Fanconi anemia pathway	3
tae03082	ATP-dependent chromatin remodeling	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03013	Nucleocytoplasmic transport	3
hvu03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03440	Homologous recombination	2
gma03040	Spliceosome	2
gma03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	2
sly03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03013	Nucleocytoplasmic transport	3
bra03440	Homologous recombination	2
bra03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03440	Homologous recombination	3
vvi03460	Fanconi anemia pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03013	Nucleocytoplasmic transport	3
mtr03460	Fanconi anemia pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03440	Homologous recombination	2
ghi03460	Fanconi anemia pathway	2
ghi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03013	Nucleocytoplasmic transport	5
bna03015	mRNA surveillance pathway	4
bna03440	Homologous recombination	2
bna03460	Fanconi anemia pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03015	mRNA surveillance pathway	4
bna03013	Nucleocytoplasmic transport	2
bna03440	Homologous recombination	2
bna03460	Fanconi anemia pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	4
sot03013	Nucleocytoplasmic transport	3
sot03015	mRNA surveillance pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04075	Plant hormone signal transduction	3
nta03440	Homologous recombination	2
nta03460	Fanconi anemia pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03440	Homologous recombination	2
nta03460	Fanconi anemia pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre04141	Protein processing in endoplasmic reticulum	8
cre00510	N-Glycan biosynthesis	5
cre00513	Various types of N-glycan biosynthesis	4

Expression

Expression pattern

Entrez Gene ID^*

4347482

123104259

123112523

123399647

100836701

100383032

8057257

817760

100791807

101268032

103857411

100260076

7462031

11437293

107914775

106387978

106437702

102599971

102617834

107816718

107818748

5722763

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 4347482 (osa-u.5 coexpression data)

Top 50 enrichment test to 4347482 (osa-u.5 coexpression data)


Species	osa	zma	ath	gma	sly	vvi	ppo	mtr	bdi	hvu	bra	cit	bna	sbi	ghi	sot	nta	cre	tae
Paralog	4	1	1	1	1	1	1	1	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 4347482 (osa-u.5 coexpression data)

Top 50 enrichment test to 4347482 (osa-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**