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Orthologous genes in OrthoFinder**

Species Gene Description
 mtr-u.5   11437293   DNA topoisomerase 3-beta 
 mtr-r.5   11437293   DNA topoisomerase 3-beta 
 mtr-m.5   11437293   DNA topoisomerase 3-beta 
 gma-u.5   100791807   DNA topoisomerase 3-beta 
 ppo-u.5   7462031   DNA topoisomerase 3-beta 
 ath-u.5   AT2G32000   DNA topoisomerase, type IA, core 
 vvi-u.5   100260076   DNA topoisomerase 3-beta 
 sly-u.5   101268032   DNA topoisomerase 3-beta 
 osa-u.5   4347482   DNA topoisomerase 3-beta-like 
 zma-u.5   100383032   DNA topoisomerase 3-beta 

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Top 50 coexpressed genes to 11437293 (mtr-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 11437293 (mtr-u.5 coexpression data)

CoexMap"11437293"


mtrLOC11437293 | Entrez gene ID : 11437293      
Species mtr gma ppo ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 3 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG mtr03440 [list] [network] Homologous recombination (67 genes)
mtr03460 [list] [network] Fanconi anemia pathway (41 genes)
GO BP
GO:0006265 [list] [network] DNA topological change  (18 genes)  IEA  
GO:0006310 [list] [network] DNA recombination  (134 genes)  IEA  
GO:0006281 [list] [network] DNA repair  (347 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (2707 genes)  IEA  
GO MF
GO:0003917 [list] [network] DNA topoisomerase type I (single strand cut, ATP-independent) activity  (10 genes)  IEA  
GO:0003677 [list] [network] DNA binding  (2104 genes)  IEA  
Protein XP_003601731.2 [sequence] [blastp]
XP_024635696.1 [sequence] [blastp]
XP_024635697.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  cyto 4,  plas 1  (predict for XP_003601731.2)
cyto 5,  nucl 4,  vacu 1,  pero 1  (predict for XP_024635696.1)
nucl 6,  cyto 4  (predict for XP_024635697.1)
Subcellular
localization
TargetP
scret 3,  other 3  (predict for XP_003601731.2)
other 8  (predict for XP_024635696.1)
other 8  (predict for XP_024635697.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

mtr-u.5
for
11437293

.
mtr-r.5
for
11437293

.
mtr-m.5
for
11437293

.
gma-u.5
for
100791807

.
ppo-u.5
for
7462031

.
ath-u.5
for
AT2G32000

.
vvi-u.5
for
100260076

.
sly-u.5
for
101268032

.
osa-u.5
for
4347482

.
zma-u.5
for
100383032

.


Ortholog ID: 11258
Species ath gma sly osa zma bra vvi ppo mtr tae tae hvu ghi bna bna cre sbi sot cit bdi nta nta
Symbol AT2G32000 LOC100791807 LOC101268032 LOC4347482 LOC100383032 LOC103857411 LOC100260076 LOC7462031 LOC11437293 LOC123104259 LOC123112523 LOC123399647 LOC107914775 LOC106387978 LOC106437702 CHLRE_17g725100v5 LOC8057257 LOC102599971 LOC102617834 LOC100836701 LOC107816718 LOC107818748
Function* DNA topoisomerase, type IA, core DNA topoisomerase 3-beta DNA topoisomerase 3-beta DNA topoisomerase 3-beta-like DNA topoisomerase 3-beta DNA topoisomerase 3-beta DNA topoisomerase 3-beta DNA topoisomerase 3-beta DNA topoisomerase 3-beta DNA topoisomerase 3-beta DNA topoisomerase 3-beta DNA topoisomerase 3-beta DNA topoisomerase 3-beta DNA topoisomerase 3-beta DNA topoisomerase 3-beta uncharacterized protein DNA topoisomerase 3-beta DNA topoisomerase 3-beta DNA topoisomerase 3-beta DNA topoisomerase 3-beta DNA topoisomerase 3-beta DNA topoisomerase 3-beta
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03440 Homologous recombination 2
gma03040 Spliceosome 2
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 2
sly03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03013 Nucleocytoplasmic transport 3
bra03440 Homologous recombination 2
bra03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03440 Homologous recombination 3
vvi03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03013 Nucleocytoplasmic transport 3
mtr03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03440 Homologous recombination 3
tae03460 Fanconi anemia pathway 3
tae03082 ATP-dependent chromatin remodeling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03440 Homologous recombination 3
tae03460 Fanconi anemia pathway 3
tae03082 ATP-dependent chromatin remodeling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03013 Nucleocytoplasmic transport 3
hvu03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03440 Homologous recombination 2
ghi03460 Fanconi anemia pathway 2
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03013 Nucleocytoplasmic transport 5
bna03015 mRNA surveillance pathway 4
bna03440 Homologous recombination 2
bna03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 4
bna03013 Nucleocytoplasmic transport 2
bna03440 Homologous recombination 2
bna03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre04141 Protein processing in endoplasmic reticulum 8
cre00510 N-Glycan biosynthesis 5
cre00513 Various types of N-glycan biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 4
sot03013 Nucleocytoplasmic transport 3
sot03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04075 Plant hormone signal transduction 3
nta03440 Homologous recombination 2
nta03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03440 Homologous recombination 2
nta03460 Fanconi anemia pathway 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 817760 100791807 101268032 4347482 100383032 103857411 100260076 7462031 11437293 123104259 123112523 123399647 107914775 106387978 106437702 5722763 8057257 102599971 102617834 100836701 107816718 107818748
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