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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107914775   DNA topoisomerase 3-beta 
 ath-u.5   AT2G32000   DNA topoisomerase, type IA, core 
 gma-u.5   100791807   DNA topoisomerase 3-beta 
 vvi-u.5   100260076   DNA topoisomerase 3-beta 
 ppo-u.5   7462031   DNA topoisomerase 3-beta 
 mtr-u.5   11437293   DNA topoisomerase 3-beta 
 sly-u.5   101268032   DNA topoisomerase 3-beta 
 osa-u.5   4347482   DNA topoisomerase 3-beta-like 
 zma-u.5   100383032   DNA topoisomerase 3-beta 

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Top 50 coexpressed genes to 107914775 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107914775 (ghi-r.1 coexpression data)

CoexMap"107914775"


ghiLOC107914775 | Entrez gene ID : 107914775    
Species ghi ath gma vvi ppo mtr sly osa zma bdi hvu bra cit bna sbi sot nta cre tae
Paralog 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ghi03440 [list] [network] Homologous recombination (106 genes)
ghi03460 [list] [network] Fanconi anemia pathway (91 genes)
GO BP
GO:0006265 [list] [network] DNA topological change  (19 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (7681 genes)  IEA  
GO MF
GO:0003917 [list] [network] DNA topoisomerase type I (single strand cut, ATP-independent) activity  (10 genes)  IEA  
GO:0003677 [list] [network] DNA binding  (4831 genes)  IEA  
Protein XP_016699286.2 [sequence] [blastp]
XP_016699287.2 [sequence] [blastp]
XP_016699288.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 5,  cyto 1,  mito 1,  plas 1,  mito_plas 1,  cyto_plas 1  (predict for XP_016699286.2)
extr 4,  chlo 3,  plas 1,  chlo_mito 1  (predict for XP_016699287.2)
cyto 6,  nucl 2,  plas 1,  vacu 1,  golg 1,  golg_plas 1  (predict for XP_016699288.2)
Subcellular
localization
TargetP
chlo 4  (predict for XP_016699286.2)
scret 8  (predict for XP_016699287.2)
other 8  (predict for XP_016699288.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107914775
ath-u.5
for
AT2G32000
gma-u.5
for
100791807
vvi-u.5
for
100260076
ppo-u.5
for
7462031
mtr-u.5
for
11437293
sly-u.5
for
101268032
osa-u.5
for
4347482
zma-u.5
for
100383032


Ortholog ID: 11258
Species ghi ath bra bna bna cit gma vvi ppo mtr sly sot nta nta osa zma tae tae hvu sbi bdi cre
Symbol LOC107914775 AT2G32000 LOC103857411 LOC106387978 LOC106437702 LOC102617834 LOC100791807 LOC100260076 LOC7462031 LOC11437293 LOC101268032 LOC102599971 LOC107816718 LOC107818748 LOC4347482 LOC100383032 LOC123104259 LOC123112523 LOC123399647 LOC8057257 LOC100836701 CHLRE_17g725100v5
Function* DNA topoisomerase 3-beta DNA topoisomerase, type IA, core DNA topoisomerase 3-beta DNA topoisomerase 3-beta DNA topoisomerase 3-beta DNA topoisomerase 3-beta DNA topoisomerase 3-beta DNA topoisomerase 3-beta DNA topoisomerase 3-beta DNA topoisomerase 3-beta DNA topoisomerase 3-beta DNA topoisomerase 3-beta DNA topoisomerase 3-beta DNA topoisomerase 3-beta DNA topoisomerase 3-beta-like DNA topoisomerase 3-beta DNA topoisomerase 3-beta DNA topoisomerase 3-beta DNA topoisomerase 3-beta DNA topoisomerase 3-beta DNA topoisomerase 3-beta uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03440 Homologous recombination 2
ghi03460 Fanconi anemia pathway 2
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03013 Nucleocytoplasmic transport 3
bra03440 Homologous recombination 2
bra03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03013 Nucleocytoplasmic transport 5
bna03015 mRNA surveillance pathway 4
bna03440 Homologous recombination 2
bna03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 4
bna03013 Nucleocytoplasmic transport 2
bna03440 Homologous recombination 2
bna03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03440 Homologous recombination 2
gma03040 Spliceosome 2
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03440 Homologous recombination 3
vvi03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03013 Nucleocytoplasmic transport 3
mtr03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 2
sly03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 4
sot03013 Nucleocytoplasmic transport 3
sot03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04075 Plant hormone signal transduction 3
nta03440 Homologous recombination 2
nta03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03440 Homologous recombination 2
nta03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03440 Homologous recombination 3
tae03460 Fanconi anemia pathway 3
tae03082 ATP-dependent chromatin remodeling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03440 Homologous recombination 3
tae03460 Fanconi anemia pathway 3
tae03082 ATP-dependent chromatin remodeling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03013 Nucleocytoplasmic transport 3
hvu03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre04141 Protein processing in endoplasmic reticulum 8
cre00510 N-Glycan biosynthesis 5
cre00513 Various types of N-glycan biosynthesis 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107914775 817760 103857411 106387978 106437702 102617834 100791807 100260076 7462031 11437293 101268032 102599971 107816718 107818748 4347482 100383032 123104259 123112523 123399647 8057257 100836701 5722763
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