ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
zma-u.5	100277150	Mediator of RNA polymerase II transcription subunit 11
zma-r.6	100277150	Mediator of RNA polymerase II transcription subunit 11
zma-u.5	100279588	uncharacterized LOC100279588
sbi-r.1	8077657	mediator of RNA polymerase II transcription subunit 11
sbi-r.1	8079437	mediator of RNA polymerase II transcription subunit 11
osa-u.5	4328559	mediator of RNA polymerase II transcription subunit 11
osa-u.5	4330605	mediator of RNA polymerase II transcription subunit 11
tae-r.2	123127215	mediator of RNA polymerase II transcription subunit 11
tae-r.2	123136813	mediator of RNA polymerase II transcription subunit 11
tae-r.2	123144298	mediator of RNA polymerase II transcription subunit 11
hvu-r.1	123403385	mediator of RNA polymerase II transcription subunit 11-like
hvu-r.1	123410422	mediator of RNA polymerase II transcription subunit 11-like
hvu-r.1	123426023	mediator of RNA polymerase II transcription subunit 11-like
bdi-r.1	100831854	mediator of RNA polymerase II transcription subunit 11
ath-u.5	AT3G01435	uncharacterized protein
gma-u.5	100792126	mediator of RNA polymerase II transcription subunit 11
gma-u.5	100306257	uncharacterized LOC100306257
sly-u.5	101262909	mediator of RNA polymerase II transcription subunit 11
bra-r.6	103870980	mediator of RNA polymerase II transcription subunit 11
bra-r.6	103850069	mediator of RNA polymerase II transcription subunit 11
vvi-u.5	100255926	mediator of RNA polymerase II transcription subunit 11
ppo-u.5	18097318	mediator of RNA polymerase II transcription subunit 11
mtr-u.5	11414265	mediator of RNA polymerase II transcription subunit 11
mtr-u.5	11413700	mediator of RNA polymerase II transcription subunit 11
ghi-r.1	107961942	mediator of RNA polymerase II transcription subunit 11
ghi-r.1	107910070	mediator of RNA polymerase II transcription subunit 11
bna-r.1	125587605	mediator of RNA polymerase II transcription subunit 11-like
bna-r.1	106434321	mediator of RNA polymerase II transcription subunit 11
bna-r.1	106433429	mediator of RNA polymerase II transcription subunit 11
sot-r.1	102599143	mediator of RNA polymerase II transcription subunit 11
cit-r.1	102607294	mediator of RNA polymerase II transcription subunit 11
nta-r.1	107788739	mediator of RNA polymerase II transcription subunit 11
nta-r.1	107770332	mediator of RNA polymerase II transcription subunit 11-like
nta-r.1	107773720	mediator of RNA polymerase II transcription subunit 11

Top 50 coexpressed genes to 100277150 (zma-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 100277150 (zma-u.5 coexpression data)

CoexMap""

[Cytoscape]

Annotation

functional annotation

Function

Mediator of RNA polymerase II transcription subunit 11

KEGG

GO BP

GO:0006357 [list] [network] regulation of transcription by RNA polymerase II

(427 genes)

IEA

GO CC

GO:0016592 [list] [network] mediator complex

(45 genes)

IEA

GO MF

GO:0003712 [list] [network] transcription coregulator activity

(148 genes)

IEA

Protein

NP_001144272.2 [sequence] [blastp]
NP_001394104.1 [sequence] [blastp]
XP_008643380.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 4, nucl 3, cyto_nucl 2, chlo_mito 2	(predict for NP_001144272.2)
chlo 4, nucl 3, cyto_nucl 2, chlo_mito 2	(predict for NP_001394104.1)
chlo 4, nucl 3, cyto_nucl 2, chlo_mito 2	(predict for XP_008643380.1)

Subcellular
localization
TargetP

mito 4	(predict for NP_001144272.2)
mito 4	(predict for NP_001394104.1)
mito 4	(predict for XP_008643380.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	zma-u.5 for 100277150	zma-r.6 for 100277150	zma-u.5 for 100279588	sbi-r.1 for 8077657	sbi-r.1 for 8079437	osa-u.5 for 4328559	osa-u.5 for 4330605	tae-r.2 for 123127215	tae-r.2 for 123136813	tae-r.2 for 123144298	hvu-r.1 for 123403385	hvu-r.1 for 123410422	hvu-r.1 for 123426023	bdi-r.1 for 100831854	ath-u.5 for AT3G01435	gma-u.5 for 100792126	gma-u.5 for 100306257	sly-u.5 for 101262909	bra-r.6 for 103870980	bra-r.6 for 103850069	vvi-u.5 for 100255926	ppo-u.5 for 18097318	mtr-u.5 for 11414265	mtr-u.5 for 11413700	ghi-r.1 for 107961942	ghi-r.1 for 107910070	bna-r.1 for 125587605	bna-r.1 for 106434321	bna-r.1 for 106433429	sot-r.1 for 102599143	cit-r.1 for 102607294	nta-r.1 for 107788739	nta-r.1 for 107770332	nta-r.1 for 107773720

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Ortholog

Ortholog ID: 5919

Species

zma

sbi

osa

tae

hvu

bdi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

Symbol

Function^*

Mediator of RNA polymerase II transcription subunit 11

uncharacterized LOC100279588