ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
bna-r.1	106434321	mediator of RNA polymerase II transcription subunit 11
bna-r.1	125587605	mediator of RNA polymerase II transcription subunit 11-like
bna-r.1	106433429	mediator of RNA polymerase II transcription subunit 11
bra-r.6	103850069	mediator of RNA polymerase II transcription subunit 11
bra-r.6	103870980	mediator of RNA polymerase II transcription subunit 11
ath-u.5	AT3G01435	uncharacterized protein
ghi-r.1	107961942	mediator of RNA polymerase II transcription subunit 11
ghi-r.1	107910070	mediator of RNA polymerase II transcription subunit 11
cit-r.1	102607294	mediator of RNA polymerase II transcription subunit 11
gma-u.5	100306257	uncharacterized LOC100306257
gma-u.5	100792126	mediator of RNA polymerase II transcription subunit 11
vvi-u.5	100255926	mediator of RNA polymerase II transcription subunit 11
ppo-u.5	18097318	mediator of RNA polymerase II transcription subunit 11
mtr-u.5	11414265	mediator of RNA polymerase II transcription subunit 11
mtr-u.5	11413700	mediator of RNA polymerase II transcription subunit 11
sly-u.5	101262909	mediator of RNA polymerase II transcription subunit 11
sot-r.1	102599143	mediator of RNA polymerase II transcription subunit 11
nta-r.1	107788739	mediator of RNA polymerase II transcription subunit 11
nta-r.1	107770332	mediator of RNA polymerase II transcription subunit 11-like
nta-r.1	107773720	mediator of RNA polymerase II transcription subunit 11
osa-u.5	4330605	mediator of RNA polymerase II transcription subunit 11
osa-u.5	4328559	mediator of RNA polymerase II transcription subunit 11
zma-u.5	100279588	uncharacterized LOC100279588
zma-u.5	100277150	Mediator of RNA polymerase II transcription subunit 11
tae-r.2	123127215	mediator of RNA polymerase II transcription subunit 11
tae-r.2	123136813	mediator of RNA polymerase II transcription subunit 11
tae-r.2	123144298	mediator of RNA polymerase II transcription subunit 11
hvu-r.1	123403385	mediator of RNA polymerase II transcription subunit 11-like
hvu-r.1	123410422	mediator of RNA polymerase II transcription subunit 11-like
hvu-r.1	123426023	mediator of RNA polymerase II transcription subunit 11-like
sbi-r.1	8077657	mediator of RNA polymerase II transcription subunit 11
sbi-r.1	8079437	mediator of RNA polymerase II transcription subunit 11
bdi-r.1	100831854	mediator of RNA polymerase II transcription subunit 11

Top 50 coexpressed genes to 106434321 (bna-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 106434321 (bna-r.1 coexpression data)

CoexMap"106434321"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0006357 [list] [network] regulation of transcription by RNA polymerase II

(1371 genes)

IEA

GO CC

GO:0016592 [list] [network] mediator complex

(98 genes)

IEA

GO MF

GO:0003712 [list] [network] transcription coregulator activity

(379 genes)

IEA

Protein

XP_013730613.2 [sequence] [blastp]

Subcellular
localization
wolf

chlo 8, nucl 1, cyto 1, mito 1, cyto_nucl 1

(predict for XP_013730613.2)

Subcellular
localization
TargetP

mito 5, other 4

(predict for XP_013730613.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bna-r.1 for 106434321	bna-r.1 for 125587605	bna-r.1 for 106433429	bra-r.6 for 103850069	bra-r.6 for 103870980	ath-u.5 for AT3G01435	ghi-r.1 for 107961942	ghi-r.1 for 107910070	cit-r.1 for 102607294	gma-u.5 for 100306257	gma-u.5 for 100792126	vvi-u.5 for 100255926	ppo-u.5 for 18097318	mtr-u.5 for 11414265	mtr-u.5 for 11413700	sly-u.5 for 101262909	sot-r.1 for 102599143	nta-r.1 for 107788739	nta-r.1 for 107770332	nta-r.1 for 107773720	osa-u.5 for 4330605	osa-u.5 for 4328559	zma-u.5 for 100279588	zma-u.5 for 100277150	tae-r.2 for 123127215	tae-r.2 for 123136813	tae-r.2 for 123144298	hvu-r.1 for 123403385	hvu-r.1 for 123410422	hvu-r.1 for 123426023	sbi-r.1 for 8077657	sbi-r.1 for 8079437	bdi-r.1 for 100831854

Ortholog

Ortholog ID: 5919

Species

bna

bra

ath

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

Function^*