ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
zma-u.5	100382538	uncharacterized LOC100382538
zma-r.6	100382538	uncharacterized LOC100382538
zma-u.5	103647784	heterogeneous nuclear ribonucleoprotein 1
zma-u.5	100279268	RNA-binding (RRM/RBD/RNP motifs) family protein
zma-u.5	100273471	RNA-binding (RRM/RBD/RNP motifs) family protein
sbi-r.1	8075077	heterogeneous nuclear ribonucleoprotein 1
sbi-r.1	8076737	heterogeneous nuclear ribonucleoprotein 1
osa-u.5	4343740	heterogeneous nuclear ribonucleoprotein 1
osa-u.5	4350986	heterogeneous nuclear ribonucleoprotein 1
osa-u.5	4341330	uncharacterized LOC4341330
tae-r.2	123127335	heterogeneous nuclear ribonucleoprotein A0
tae-r.2	123052270	heterogeneous nuclear ribonucleoprotein 1
tae-r.2	123085962	heterogeneous nuclear ribonucleoprotein 1
hvu-r.1	123448455	heterogeneous nuclear ribonucleoprotein 1
hvu-r.1	123425535	heterogeneous nuclear ribonucleoprotein 1-like
hvu-r.1	123413593	heterogeneous nuclear ribonucleoprotein 1-like
bdi-r.1	100846541	heterogeneous nuclear ribonucleoprotein 1
bdi-r.1	100831046	heterogeneous nuclear ribonucleoprotein A0
bdi-r.1	100837968	heterogeneous nuclear ribonucleoprotein A0
ath-u.5	AT3G07810	RNA-binding (RRM/RBD/RNP motifs) family protein
ath-u.5	AT5G47620	RNA-binding (RRM/RBD/RNP motifs) family protein
ath-u.5	AT1G17640	RNA-binding (RRM/RBD/RNP motifs) family protein
gma-u.5	100814628	heterogeneous nuclear ribonucleoprotein 1
gma-u.5	100818080	heterogeneous nuclear ribonucleoprotein 1
gma-u.5	100794390	heterogeneous nuclear ribonucleoprotein 1
sly-u.5	101261462	heterogeneous nuclear ribonucleoprotein 1
sly-u.5	101260528	heterogeneous nuclear ribonucleoprotein 1
sly-u.5	101260293	heterogeneous nuclear ribonucleoprotein 1
bra-r.6	103853827	heterogeneous nuclear ribonucleoprotein 1
bra-r.6	103849048	heterogeneous nuclear ribonucleoprotein 1
bra-r.6	103839516	heterogeneous nuclear ribonucleoprotein 1
vvi-u.5	100266965	heterogeneous nuclear ribonucleoprotein 1
vvi-u.5	100246008	heterogeneous nuclear ribonucleoprotein 1
ppo-u.5	7458263	heterogeneous nuclear ribonucleoprotein 1
ppo-u.5	18096800	heterogeneous nuclear ribonucleoprotein 1
ppo-u.5	18094817	heterogeneous nuclear ribonucleoprotein 1
mtr-u.5	11438007	heterogeneous nuclear ribonucleoprotein 1
mtr-u.5	11424064	heterogeneous nuclear ribonucleoprotein 1
mtr-u.5	11416649	heterogeneous nuclear ribonucleoprotein 1
ghi-r.1	107924715	heterogeneous nuclear ribonucleoprotein 1
ghi-r.1	107962067	heterogeneous nuclear ribonucleoprotein 1
ghi-r.1	107917827	heterogeneous nuclear ribonucleoprotein 1
bna-r.1	106419742	heterogeneous nuclear ribonucleoprotein 1
bna-r.1	106432058	heterogeneous nuclear ribonucleoprotein 1
bna-r.1	106447269	heterogeneous nuclear ribonucleoprotein 1-like
sot-r.1	102602365	heterogeneous nuclear ribonucleoprotein 1-like
sot-r.1	102604973	heterogeneous nuclear ribonucleoprotein 1-like
sot-r.1	102581600	heterogeneous nuclear ribonucleoprotein 1
cit-r.1	102624019	heterogeneous nuclear ribonucleoprotein 1
cit-r.1	102614891	heterogeneous nuclear ribonucleoprotein 1
cit-r.1	102621909	heterogeneous nuclear ribonucleoprotein 1
nta-r.1	107762949	heterogeneous nuclear ribonucleoprotein 1
nta-r.1	107767326	heterogeneous nuclear ribonucleoprotein 1
nta-r.1	107773440	uncharacterized LOC107773440
cre-r.1	CHLRE_07g330300v5	uncharacterized protein
cre-r.1	CHLRE_12g560300v5	uncharacterized protein

Top 50 coexpressed genes to 100382538 (zma-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 100382538 (zma-u.5 coexpression data)

CoexMap"100382538"

[Cytoscape]

Annotation

functional annotation

KEGG

zma03040 [list] [network] Spliceosome (506 genes)

GO BP

GO:0010468 [list] [network] regulation of gene expression

(2389 genes)

IEA

GO CC

GO:0005654 [list] [network] nucleoplasm	(217 genes)	IEA
GO:0000785 [list] [network] chromatin	(252 genes)	IEA

GO MF

GO:0003723 [list] [network] RNA binding

(1549 genes)

IEA

Protein

NP_001168743.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 10

(predict for NP_001168743.1)

Subcellular
localization
TargetP

other 9

(predict for NP_001168743.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	zma-u.5 for 100382538	zma-r.6 for 100382538	zma-u.5 for 103647784	zma-u.5 for 100279268	zma-u.5 for 100273471	sbi-r.1 for 8075077	sbi-r.1 for 8076737	osa-u.5 for 4343740	osa-u.5 for 4350986	osa-u.5 for 4341330	tae-r.2 for 123127335	tae-r.2 for 123052270	tae-r.2 for 123085962	hvu-r.1 for 123448455	hvu-r.1 for 123425535	hvu-r.1 for 123413593	bdi-r.1 for 100846541	bdi-r.1 for 100831046	bdi-r.1 for 100837968	ath-u.5 for AT3G07810	ath-u.5 for AT5G47620	ath-u.5 for AT1G17640	gma-u.5 for 100814628	gma-u.5 for 100818080	gma-u.5 for 100794390	sly-u.5 for 101261462	sly-u.5 for 101260528	sly-u.5 for 101260293	bra-r.6 for 103853827	bra-r.6 for 103849048	bra-r.6 for 103839516	vvi-u.5 for 100266965	vvi-u.5 for 100246008	ppo-u.5 for 7458263	ppo-u.5 for 18096800	ppo-u.5 for 18094817	mtr-u.5 for 11438007	mtr-u.5 for 11424064	mtr-u.5 for 11416649	ghi-r.1 for 107924715	ghi-r.1 for 107962067	ghi-r.1 for 107917827	bna-r.1 for 106419742	bna-r.1 for 106432058	bna-r.1 for 106447269	sot-r.1 for 102602365	sot-r.1 for 102604973	sot-r.1 for 102581600	cit-r.1 for 102624019	cit-r.1 for 102614891	cit-r.1 for 102621909	nta-r.1 for 107762949	nta-r.1 for 107767326	nta-r.1 for 107773440	cre-r.1 for CHLRE_07g330300v5	cre-r.1 for CHLRE_12g560300v5

Ortholog

Ortholog ID: 460

Species

zma

sbi

osa

tae

hvu

bdi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

Function^*