ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
bdi-r.1	100837968	heterogeneous nuclear ribonucleoprotein A0
bdi-r.1	100846541	heterogeneous nuclear ribonucleoprotein 1
bdi-r.1	100831046	heterogeneous nuclear ribonucleoprotein A0
bdi-r.1	100836006	heterogeneous nuclear ribonucleoprotein 1
tae-r.2	123127335	heterogeneous nuclear ribonucleoprotein A0
tae-r.2	123052270	heterogeneous nuclear ribonucleoprotein 1
tae-r.2	123085962	heterogeneous nuclear ribonucleoprotein 1
hvu-r.1	123448455	heterogeneous nuclear ribonucleoprotein 1
hvu-r.1	123425535	heterogeneous nuclear ribonucleoprotein 1-like
hvu-r.1	123413593	heterogeneous nuclear ribonucleoprotein 1-like
osa-u.5	4343740	heterogeneous nuclear ribonucleoprotein 1
osa-u.5	4328758	uncharacterized LOC4328758
osa-u.5	4341330	uncharacterized LOC4341330
zma-u.5	100279976	uncharacterized LOC100279976
zma-u.5	103632085	heterogeneous nuclear ribonucleoprotein 1
zma-u.5	100382538	uncharacterized LOC100382538
sbi-r.1	8085536	heterogeneous nuclear ribonucleoprotein A3
sbi-r.1	8076737	heterogeneous nuclear ribonucleoprotein 1
ath-u.5	AT3G07810	RNA-binding (RRM/RBD/RNP motifs) family protein
ath-u.5	AT5G47620	RNA-binding (RRM/RBD/RNP motifs) family protein
ath-u.5	AT1G17640	RNA-binding (RRM/RBD/RNP motifs) family protein
gma-u.5	100814628	heterogeneous nuclear ribonucleoprotein 1
gma-u.5	100818080	heterogeneous nuclear ribonucleoprotein 1
gma-u.5	100794390	heterogeneous nuclear ribonucleoprotein 1
sly-u.5	101260528	heterogeneous nuclear ribonucleoprotein 1
sly-u.5	101263390	heterogeneous nuclear ribonucleoprotein 1-like
sly-u.5	101261462	heterogeneous nuclear ribonucleoprotein 1
bra-r.6	103853827	heterogeneous nuclear ribonucleoprotein 1
bra-r.6	103859241	heterogeneous nuclear ribonucleoprotein 1
bra-r.6	103827631	heterogeneous nuclear ribonucleoprotein 1
vvi-u.5	100246008	heterogeneous nuclear ribonucleoprotein 1
vvi-u.5	100266965	heterogeneous nuclear ribonucleoprotein 1
ppo-u.5	7458263	heterogeneous nuclear ribonucleoprotein 1
ppo-u.5	18094817	heterogeneous nuclear ribonucleoprotein 1
ppo-u.5	18106028	heterogeneous nuclear ribonucleoprotein 1
mtr-u.5	11416649	heterogeneous nuclear ribonucleoprotein 1
mtr-u.5	11424064	heterogeneous nuclear ribonucleoprotein 1
mtr-u.5	11438007	heterogeneous nuclear ribonucleoprotein 1
ghi-r.1	107924715	heterogeneous nuclear ribonucleoprotein 1
ghi-r.1	107962067	heterogeneous nuclear ribonucleoprotein 1
ghi-r.1	107917827	heterogeneous nuclear ribonucleoprotein 1
bna-r.1	106447269	heterogeneous nuclear ribonucleoprotein 1-like
bna-r.1	106452871	heterogeneous nuclear ribonucleoprotein 1-like
bna-r.1	106346855	heterogeneous nuclear ribonucleoprotein 1-like
sot-r.1	102593107	heterogeneous nuclear ribonucleoprotein 1-like
sot-r.1	102592136	heterogeneous nuclear ribonucleoprotein 1
sot-r.1	102598249	heterogeneous nuclear ribonucleoprotein 1
cit-r.1	102614891	heterogeneous nuclear ribonucleoprotein 1
cit-r.1	102621909	heterogeneous nuclear ribonucleoprotein 1
cit-r.1	102624019	heterogeneous nuclear ribonucleoprotein 1
nta-r.1	107773440	uncharacterized LOC107773440
nta-r.1	107784125	uncharacterized LOC107784125
nta-r.1	107767326	heterogeneous nuclear ribonucleoprotein 1
cre-r.1	CHLRE_07g330300v5	uncharacterized protein
cre-r.1	CHLRE_12g560300v5	uncharacterized protein

Top 50 coexpressed genes to 100837968 (bdi-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 100837968 (bdi-r.1 coexpression data)

CoexMap"100837968"

[Cytoscape]

Annotation

functional annotation

KEGG

bdi03040 [list] [network] Spliceosome (282 genes)

GO BP

GO:0010468 [list] [network] regulation of gene expression

(1881 genes)

IEA

GO CC

GO:0005654 [list] [network] nucleoplasm

(221 genes)

IEA

GO MF

GO:0003723 [list] [network] RNA binding

(1239 genes)

IEA

Protein

XP_010227591.1 [sequence] [blastp]
XP_014753107.1 [sequence] [blastp]
XP_014753108.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 6, mito 3	(predict for XP_010227591.1)
nucl 10	(predict for XP_014753107.1)
nucl 6, mito 3	(predict for XP_014753108.1)

Subcellular
localization
TargetP

chlo 4, mito 3, other 3	(predict for XP_010227591.1)
other 8	(predict for XP_014753107.1)
chlo 4, mito 3, other 3	(predict for XP_014753108.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bdi-r.1 for 100837968	bdi-r.1 for 100846541	bdi-r.1 for 100831046	bdi-r.1 for 100836006	tae-r.2 for 123127335	tae-r.2 for 123052270	tae-r.2 for 123085962	hvu-r.1 for 123448455	hvu-r.1 for 123425535	hvu-r.1 for 123413593	osa-u.5 for 4343740	osa-u.5 for 4328758	osa-u.5 for 4341330	zma-u.5 for 100279976	zma-u.5 for 103632085	zma-u.5 for 100382538	sbi-r.1 for 8085536	sbi-r.1 for 8076737	ath-u.5 for AT3G07810	ath-u.5 for AT5G47620	ath-u.5 for AT1G17640	gma-u.5 for 100814628	gma-u.5 for 100818080	gma-u.5 for 100794390	sly-u.5 for 101260528	sly-u.5 for 101263390	sly-u.5 for 101261462	bra-r.6 for 103853827	bra-r.6 for 103859241	bra-r.6 for 103827631	vvi-u.5 for 100246008	vvi-u.5 for 100266965	ppo-u.5 for 7458263	ppo-u.5 for 18094817	ppo-u.5 for 18106028	mtr-u.5 for 11416649	mtr-u.5 for 11424064	mtr-u.5 for 11438007	ghi-r.1 for 107924715	ghi-r.1 for 107962067	ghi-r.1 for 107917827	bna-r.1 for 106447269	bna-r.1 for 106452871	bna-r.1 for 106346855	sot-r.1 for 102593107	sot-r.1 for 102592136	sot-r.1 for 102598249	cit-r.1 for 102614891	cit-r.1 for 102621909	cit-r.1 for 102624019	nta-r.1 for 107773440	nta-r.1 for 107784125	nta-r.1 for 107767326	cre-r.1 for CHLRE_07g330300v5	cre-r.1 for CHLRE_12g560300v5

Ortholog

Ortholog ID: 460

Species

bdi

tae

hvu

osa

zma

sbi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

Function^*

heterogeneous nuclear ribonucleoprotein A0