ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
gma-u.5	100794390	heterogeneous nuclear ribonucleoprotein 1
gma-r.7	100794390	heterogeneous nuclear ribonucleoprotein 1
gma-m.5	100794390	heterogeneous nuclear ribonucleoprotein 1
gma-u.5	100814628	heterogeneous nuclear ribonucleoprotein 1
gma-u.5	100818080	heterogeneous nuclear ribonucleoprotein 1
gma-u.5	100788515	heterogeneous nuclear ribonucleoprotein 1
mtr-u.5	11438007	heterogeneous nuclear ribonucleoprotein 1
mtr-u.5	11424064	heterogeneous nuclear ribonucleoprotein 1
mtr-u.5	11416649	heterogeneous nuclear ribonucleoprotein 1
ppo-u.5	7458263	heterogeneous nuclear ribonucleoprotein 1
ppo-u.5	18096800	heterogeneous nuclear ribonucleoprotein 1
ppo-u.5	18094817	heterogeneous nuclear ribonucleoprotein 1
ath-u.5	AT3G07810	RNA-binding (RRM/RBD/RNP motifs) family protein
ath-u.5	AT5G47620	RNA-binding (RRM/RBD/RNP motifs) family protein
ath-u.5	AT1G17640	RNA-binding (RRM/RBD/RNP motifs) family protein
bra-r.6	103872546	heterogeneous nuclear ribonucleoprotein 1
bra-r.6	103870631	heterogeneous nuclear ribonucleoprotein 1
bra-r.6	103827631	heterogeneous nuclear ribonucleoprotein 1
vvi-u.5	100267443	heterogeneous nuclear ribonucleoprotein 1
vvi-u.5	100266965	heterogeneous nuclear ribonucleoprotein 1
ghi-r.1	107924715	heterogeneous nuclear ribonucleoprotein 1
ghi-r.1	107962067	heterogeneous nuclear ribonucleoprotein 1
ghi-r.1	107917827	heterogeneous nuclear ribonucleoprotein 1
bna-r.1	106419742	heterogeneous nuclear ribonucleoprotein 1
bna-r.1	106432058	heterogeneous nuclear ribonucleoprotein 1
bna-r.1	106447269	heterogeneous nuclear ribonucleoprotein 1-like
cit-r.1	102624019	heterogeneous nuclear ribonucleoprotein 1
cit-r.1	102614891	heterogeneous nuclear ribonucleoprotein 1
cit-r.1	102621909	heterogeneous nuclear ribonucleoprotein 1
sly-u.5	101256558	heterogeneous nuclear ribonucleoprotein 1
sly-u.5	101260293	heterogeneous nuclear ribonucleoprotein 1
sly-u.5	101260528	heterogeneous nuclear ribonucleoprotein 1
sot-r.1	102602365	heterogeneous nuclear ribonucleoprotein 1-like
sot-r.1	102604973	heterogeneous nuclear ribonucleoprotein 1-like
sot-r.1	102581600	heterogeneous nuclear ribonucleoprotein 1
nta-r.1	107762949	heterogeneous nuclear ribonucleoprotein 1
nta-r.1	107767326	heterogeneous nuclear ribonucleoprotein 1
nta-r.1	107773440	uncharacterized LOC107773440
osa-u.5	4350986	heterogeneous nuclear ribonucleoprotein 1
osa-u.5	4328758	uncharacterized LOC4328758
osa-u.5	4343740	heterogeneous nuclear ribonucleoprotein 1
zma-u.5	100382538	uncharacterized LOC100382538
zma-u.5	100193339	uncharacterized LOC100193339
zma-u.5	100216861	uncharacterized LOC100216861
tae-r.2	123127335	heterogeneous nuclear ribonucleoprotein A0
tae-r.2	123052270	heterogeneous nuclear ribonucleoprotein 1
tae-r.2	123085962	heterogeneous nuclear ribonucleoprotein 1
hvu-r.1	123448455	heterogeneous nuclear ribonucleoprotein 1
hvu-r.1	123425535	heterogeneous nuclear ribonucleoprotein 1-like
hvu-r.1	123413593	heterogeneous nuclear ribonucleoprotein 1-like
sbi-r.1	8075077	heterogeneous nuclear ribonucleoprotein 1
sbi-r.1	8076737	heterogeneous nuclear ribonucleoprotein 1
bdi-r.1	100846541	heterogeneous nuclear ribonucleoprotein 1
bdi-r.1	100831046	heterogeneous nuclear ribonucleoprotein A0
bdi-r.1	100837968	heterogeneous nuclear ribonucleoprotein A0
cre-r.1	CHLRE_07g330300v5	uncharacterized protein
cre-r.1	CHLRE_12g560300v5	uncharacterized protein

Top 50 coexpressed genes to 100794390 (gma-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 100794390 (gma-u.5 coexpression data)

CoexMap"100794390"

[Cytoscape]

Annotation

functional annotation

KEGG

gmx03015 [list] [network] mRNA surveillance pathway (214 genes)

GO BP

GO:0006417 [list] [network] regulation of translation

(100 genes)

IEA

GO CC

GO MF

GO:0003729 [list] [network] mRNA binding

(563 genes)

IEA

Protein

XP_003551514.1 [sequence] [blastp]
XP_014626546.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 10	(predict for XP_003551514.1)
nucl 10	(predict for XP_014626546.1)

Subcellular
localization
TargetP

other 9	(predict for XP_003551514.1)
other 9	(predict for XP_014626546.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	gma-u.5 for 100794390	gma-r.7 for 100794390	gma-m.5 for 100794390	gma-u.5 for 100814628	gma-u.5 for 100818080	gma-u.5 for 100788515	mtr-u.5 for 11438007	mtr-u.5 for 11424064	mtr-u.5 for 11416649	ppo-u.5 for 7458263	ppo-u.5 for 18096800	ppo-u.5 for 18094817	ath-u.5 for AT3G07810	ath-u.5 for AT5G47620	ath-u.5 for AT1G17640	bra-r.6 for 103872546	bra-r.6 for 103870631	bra-r.6 for 103827631	vvi-u.5 for 100267443	vvi-u.5 for 100266965	ghi-r.1 for 107924715	ghi-r.1 for 107962067	ghi-r.1 for 107917827	bna-r.1 for 106419742	bna-r.1 for 106432058	bna-r.1 for 106447269	cit-r.1 for 102624019	cit-r.1 for 102614891	cit-r.1 for 102621909	sly-u.5 for 101256558	sly-u.5 for 101260293	sly-u.5 for 101260528	sot-r.1 for 102602365	sot-r.1 for 102604973	sot-r.1 for 102581600	nta-r.1 for 107762949	nta-r.1 for 107767326	nta-r.1 for 107773440	osa-u.5 for 4350986	osa-u.5 for 4328758	osa-u.5 for 4343740	zma-u.5 for 100382538	zma-u.5 for 100193339	zma-u.5 for 100216861	tae-r.2 for 123127335	tae-r.2 for 123052270	tae-r.2 for 123085962	hvu-r.1 for 123448455	hvu-r.1 for 123425535	hvu-r.1 for 123413593	sbi-r.1 for 8075077	sbi-r.1 for 8076737	bdi-r.1 for 100846541	bdi-r.1 for 100831046	bdi-r.1 for 100837968	cre-r.1 for CHLRE_07g330300v5	cre-r.1 for CHLRE_12g560300v5

Ortholog

Ortholog ID: 460

Species

gma

mtr

ppo

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*