ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
gma-u.5	100782712	serine-threonine kinase receptor-associated protein
gma-r.7	100782712	serine-threonine kinase receptor-associated protein
gma-m.5	100782712	serine-threonine kinase receptor-associated protein
gma-u.5	100818422	serine-threonine kinase receptor-associated protein
mtr-u.5	25486758	serine-threonine kinase receptor-associated protein
ppo-u.5	7478372	uncharacterized LOC7478372
ppo-u.5	7490969	uncharacterized LOC7490969
ath-u.5	AT3G15610	Transducin/WD40 repeat-like superfamily protein
ath-u.5	AT1G15470	Transducin/WD40 repeat-like superfamily protein
ath-u.5	AT1G52730	Transducin/WD40 repeat-like superfamily protein
bra-r.6	103868481	serine-threonine kinase receptor-associated protein
bra-r.6	103872342	serine-threonine kinase receptor-associated protein
vvi-u.5	100260049	uncharacterized LOC100260049
vvi-u.5	100261048	uncharacterized LOC100261048
ghi-r.1	107962641	serine-threonine kinase receptor-associated protein
ghi-r.1	107949560	serine-threonine kinase receptor-associated protein
ghi-r.1	107913916	serine-threonine kinase receptor-associated protein
bna-r.1	106346655	serine-threonine kinase receptor-associated protein
bna-r.1	106364555	serine-threonine kinase receptor-associated protein-like
bna-r.1	125609501	serine-threonine kinase receptor-associated protein-like
cit-r.1	102610385	uncharacterized LOC102610385
cit-r.1	102619037	uncharacterized LOC102619037
sly-u.5	101253366	uncharacterized LOC101253366
sot-r.1	102586216	serine-threonine kinase receptor-associated protein-like
nta-r.1	107793048	uncharacterized LOC107793048
nta-r.1	107778059	uncharacterized LOC107778059
nta-r.1	107776117	uncharacterized LOC107776117
osa-u.5	4341446	uncharacterized LOC4341446
osa-u.5	4328675	uncharacterized LOC4328675
zma-u.5	103629787	serine-threonine kinase receptor-associated protein-like
zma-u.5	100274502	uncharacterized LOC100274502
tae-r.2	123156840	serine-threonine kinase receptor-associated protein
tae-r.2	123165014	serine-threonine kinase receptor-associated protein
tae-r.2	123111831	serine-threonine kinase receptor-associated protein
hvu-r.1	123413342	serine-threonine kinase receptor-associated protein-like
hvu-r.1	123395389	serine-threonine kinase receptor-associated protein-like
sbi-r.1	8082245	serine-threonine kinase receptor-associated protein
sbi-r.1	8082936	serine-threonine kinase receptor-associated protein
bdi-r.1	100845468	serine-threonine kinase receptor-associated protein
cre-r.1	CHLRE_06g302750v5	uncharacterized protein

Top 50 coexpressed genes to 100782712 (gma-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 100782712 (gma-u.5 coexpression data)

CoexMap"100782712"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0000387 [list] [network] spliceosomal snRNP assembly

(40 genes)

IEA

GO CC

GO:0032797 [list] [network] SMN complex

(4 genes)

IEA

GO MF

GO:0003723 [list] [network] RNA binding	(2019 genes)	IEA
GO:0005515 [list] [network] protein binding	(7243 genes)	IEA

Protein

XP_003549786.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 7, nucl 3

(predict for XP_003549786.1)

Subcellular
localization
TargetP

other 6

(predict for XP_003549786.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	gma-u.5 for 100782712	gma-r.7 for 100782712	gma-m.5 for 100782712	gma-u.5 for 100818422	mtr-u.5 for 25486758	ppo-u.5 for 7478372	ppo-u.5 for 7490969	ath-u.5 for AT3G15610	ath-u.5 for AT1G15470	ath-u.5 for AT1G52730	bra-r.6 for 103868481	bra-r.6 for 103872342	vvi-u.5 for 100260049	vvi-u.5 for 100261048	ghi-r.1 for 107962641	ghi-r.1 for 107949560	ghi-r.1 for 107913916	bna-r.1 for 106346655	bna-r.1 for 106364555	bna-r.1 for 125609501	cit-r.1 for 102610385	cit-r.1 for 102619037	sly-u.5 for 101253366	sot-r.1 for 102586216	nta-r.1 for 107793048	nta-r.1 for 107778059	nta-r.1 for 107776117	osa-u.5 for 4341446	osa-u.5 for 4328675	zma-u.5 for 103629787	zma-u.5 for 100274502	tae-r.2 for 123156840	tae-r.2 for 123165014	tae-r.2 for 123111831	hvu-r.1 for 123413342	hvu-r.1 for 123395389	sbi-r.1 for 8082245	sbi-r.1 for 8082936	bdi-r.1 for 100845468	cre-r.1 for CHLRE_06g302750v5

Ortholog

Ortholog ID: 2813

Species

gma

mtr

ppo

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

serine-threonine kinase receptor-associated protein

uncharacterized LOC7478372

uncharacterized LOC7490969

Transducin/WD40 repeat-like superfamily protein

serine-threonine kinase receptor-associated protein

uncharacterized LOC100260049

uncharacterized LOC100261048

serine-threonine kinase receptor-associated protein

serine-threonine kinase receptor-associated protein-like

serine-threonine kinase receptor-associated protein

serine-threonine kinase receptor-associated protein-like

uncharacterized LOC102610385

uncharacterized LOC102619037

uncharacterized LOC101253366

serine-threonine kinase receptor-associated protein-like

uncharacterized LOC107793048

uncharacterized LOC107778059

uncharacterized LOC107776117

uncharacterized LOC4341446

uncharacterized LOC4328675

serine-threonine kinase receptor-associated protein-like

uncharacterized LOC100274502

serine-threonine kinase receptor-associated protein

serine-threonine kinase receptor-associated protein-like

serine-threonine kinase receptor-associated protein

uncharacterized protein

Coexmap

Please wait a moment.

Coexpression

Please wait a moment.

KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03060	Protein export	3
gma04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04141	Protein processing in endoplasmic reticulum	4
gma03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	4
mtr03420	Nucleotide excision repair	3
mtr03010	Ribosome	3
mtr03020	RNA polymerase	2
mtr03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04141	Protein processing in endoplasmic reticulum	3
ath00510	N-Glycan biosynthesis	2
ath00513	Various types of N-glycan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03060	Protein export	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03050	Proteasome	4
ath03013	Nucleocytoplasmic transport	2
ath03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03050	Proteasome	8
bra03040	Spliceosome	2
bra03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00190	Oxidative phosphorylation	4
bra01230	Biosynthesis of amino acids	2
bra00020	Citrate cycle (TCA cycle)	2
bra01200	Carbon metabolism	2
bra01210	2-Oxocarboxylic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03050	Proteasome	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03010	Ribosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00020	Citrate cycle (TCA cycle)	4
ghi00640	Propanoate metabolism	4
ghi01200	Carbon metabolism	4
ghi03060	Protein export	2
ghi04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00020	Citrate cycle (TCA cycle)	6
ghi01200	Carbon metabolism	6
ghi00640	Propanoate metabolism	4
ghi01210	2-Oxocarboxylic acid metabolism	2
ghi01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00020	Citrate cycle (TCA cycle)	4
ghi00640	Propanoate metabolism	4
ghi01200	Carbon metabolism	4
ghi03060	Protein export	2
ghi04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03050	Proteasome	7
cit00190	Oxidative phosphorylation	4
cit04145	Phagosome	4
cit04144	Endocytosis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03060	Protein export	2
cit03008	Ribosome biogenesis in eukaryotes	2
cit04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03015	mRNA surveillance pathway	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03015	mRNA surveillance pathway	3
sot04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04075	Plant hormone signal transduction	3
nta03015	mRNA surveillance pathway	2
nta04382	Cornified envelope formation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04075	Plant hormone signal transduction	3
nta03015	mRNA surveillance pathway	2
nta04382	Cornified envelope formation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00190	Oxidative phosphorylation	7
osa00020	Citrate cycle (TCA cycle)	4
osa01200	Carbon metabolism	4
osa00620	Pyruvate metabolism	3
osa00630	Glyoxylate and dicarboxylate metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00230	Purine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03050	Proteasome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03050	Proteasome	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00190	Oxidative phosphorylation	6
hvu04145	Phagosome	3
hvu01230	Biosynthesis of amino acids	2
hvu01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04141	Protein processing in endoplasmic reticulum	3
sbi03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03050	Proteasome	4
sbi03013	Nucleocytoplasmic transport	2
sbi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03050	Proteasome	10

Expression

Expression pattern

Entrez Gene ID^*

100782712

100818422

25486758

7478372

7490969

820803

838117

841706

103868481

103872342

100260049

100261048

107962641

107907437

107901194

125609501

106402590

125598501

102610385

102619037

101253366

102586216

107793048

107778059

107776117

4341446

4328675

103629787

100274502

123156840

123165014

123148136

123413342

123395389

8082245

8082936

100845468

5716942

The preparation time of this page was 2.3 [sec].


Species	gma	mtr	ppo	ath	bra	vvi	ghi	bna	cit	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	4	1	2	3	2	2	3	3	2	1	1	3	2	2	3	2	2	1	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100782712 (gma-u.5 coexpression data)

Top 50 enrichment test to 100782712 (gma-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**