ATTED-II : GeneCoexpression result

Species	Gene	Description
nta-r.1	107776117	uncharacterized LOC107776117
sly-u.5	101253366	uncharacterized LOC101253366
ath-u.5	AT3G15610	Transducin/WD40 repeat-like superfamily protein
ath-u.5	AT1G15470	Transducin/WD40 repeat-like superfamily protein
ath-u.5	AT1G52730	Transducin/WD40 repeat-like superfamily protein
gma-u.5	100818422	serine-threonine kinase receptor-associated protein
gma-u.5	100782712	serine-threonine kinase receptor-associated protein
vvi-u.5	100261048	uncharacterized LOC100261048
vvi-u.5	100260049	uncharacterized LOC100260049
ppo-u.5	7478372	uncharacterized LOC7478372
ppo-u.5	7490969	uncharacterized LOC7490969
mtr-u.5	25486758	serine-threonine kinase receptor-associated protein
osa-u.5	4328675	uncharacterized LOC4328675
osa-u.5	4341446	uncharacterized LOC4341446
zma-u.5	103629787	serine-threonine kinase receptor-associated protein-like
zma-u.5	100274502	uncharacterized LOC100274502

Annotation

functional annotation

KEGG

GO BP

GO:0000387 [list] [network] spliceosomal snRNP assembly

(48 genes)

IEA

GO CC

GO:0032797 [list] [network] SMN complex

(7 genes)

IEA

GO MF

GO:0003723 [list] [network] RNA binding	(2607 genes)	IEA
GO:0005515 [list] [network] protein binding	(7685 genes)	IEA

Protein

XP_016451435.2 [sequence] [blastp]

Subcellular
localization
wolf

nucl 5, cyto 2, chlo 1, cyto_pero 1

(predict for XP_016451435.2)

Subcellular
localization
TargetP

other 7

(predict for XP_016451435.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	nta-r.1 for 107776117	sly-u.5 for 101253366	ath-u.5 for AT3G15610	ath-u.5 for AT1G15470	ath-u.5 for AT1G52730	gma-u.5 for 100818422	gma-u.5 for 100782712	vvi-u.5 for 100261048	vvi-u.5 for 100260049	ppo-u.5 for 7478372	ppo-u.5 for 7490969	mtr-u.5 for 25486758	osa-u.5 for 4328675	osa-u.5 for 4341446	zma-u.5 for 103629787	zma-u.5 for 100274502

Ortholog

Ortholog ID: 2813

Species

nta

sly

sot

ath

gma

bra

vvi

ppo

mtr

ghi

bna

cit

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

uncharacterized LOC107778059

uncharacterized LOC107776117

uncharacterized LOC101253366

serine-threonine kinase receptor-associated protein-like

Transducin/WD40 repeat-like superfamily protein

serine-threonine kinase receptor-associated protein

uncharacterized LOC100261048

uncharacterized LOC100260049

uncharacterized LOC7478372

uncharacterized LOC7490969

serine-threonine kinase receptor-associated protein

serine-threonine kinase receptor-associated protein-like

serine-threonine kinase receptor-associated protein

uncharacterized LOC102619037

uncharacterized LOC102610385

uncharacterized LOC4341446

uncharacterized LOC4328675

uncharacterized LOC100274502

serine-threonine kinase receptor-associated protein-like

serine-threonine kinase receptor-associated protein

serine-threonine kinase receptor-associated protein-like

serine-threonine kinase receptor-associated protein

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04075	Plant hormone signal transduction	3
nta03015	mRNA surveillance pathway	2
nta04382	Cornified envelope formation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03015	mRNA surveillance pathway	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03015	mRNA surveillance pathway	3
sot04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04141	Protein processing in endoplasmic reticulum	3
ath00510	N-Glycan biosynthesis	2
ath00513	Various types of N-glycan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03060	Protein export	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03060	Protein export	3
gma04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04141	Protein processing in endoplasmic reticulum	4
gma03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03050	Proteasome	8
bra03040	Spliceosome	2
bra03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03010	Ribosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03050	Proteasome	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	4
mtr03420	Nucleotide excision repair	3
mtr03010	Ribosome	3
mtr03020	RNA polymerase	2
mtr03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00020	Citrate cycle (TCA cycle)	4
ghi00640	Propanoate metabolism	4
ghi01200	Carbon metabolism	4
ghi03060	Protein export	2
ghi04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00020	Citrate cycle (TCA cycle)	4
ghi00640	Propanoate metabolism	4
ghi01200	Carbon metabolism	4
ghi03060	Protein export	2
ghi04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03060	Protein export	2
cit03008	Ribosome biogenesis in eukaryotes	2
cit04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03050	Proteasome	7
cit00190	Oxidative phosphorylation	4
cit04145	Phagosome	4
cit04144	Endocytosis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00190	Oxidative phosphorylation	7
osa00020	Citrate cycle (TCA cycle)	4
osa01200	Carbon metabolism	4
osa00620	Pyruvate metabolism	3
osa00630	Glyoxylate and dicarboxylate metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00230	Purine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03050	Proteasome	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00190	Oxidative phosphorylation	6
hvu04145	Phagosome	3
hvu01230	Biosynthesis of amino acids	2
hvu01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04141	Protein processing in endoplasmic reticulum	3
sbi03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03050	Proteasome	4
sbi03013	Nucleocytoplasmic transport	2
sbi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03050	Proteasome	10

Expression

Expression pattern

Entrez Gene ID^*

107778059

107776117

101253366

102586216

820803

838117

100782712

100818422

103868481

100261048

100260049

7478372

7490969

25486758

107901194

107962641

125609501

106402590

102619037

102610385

4341446

4328675

100274502

103629787

123165014

123148136

123395389

123413342

8082245

8082936

100845468

5716942

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 107776117 (nta-r.1 coexpression data)

Top 50 enrichment test to 107776117 (nta-r.1 coexpression data)


Species	nta	sly	ath	gma	vvi	ppo	mtr	osa	zma	bdi	hvu	bra	cit	bna	sbi	ghi	sot	cre	tae
Paralog	1	1	3	2	2	2	1	2	2	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 107776117 (nta-r.1 coexpression data)

Top 50 enrichment test to 107776117 (nta-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**