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Orthologous genes in OrthoFinder**

Species Gene Description
 gma-u.5   100782869   cleavage and polyadenylation specificity factor subunit 6 
 gma-r.7   100782869   cleavage and polyadenylation specificity factor subunit 6 
 gma-u.5   100813748   uncharacterized PE-PGRS family protein PE_PGRS46 
 gma-u.5   100811056   uncharacterized PE-PGRS family protein PE_PGRS46 
 gma-u.5   100813702   cleavage and polyadenylation specificity factor subunit 6 
 mtr-u.5   25489149   uncharacterized PE-PGRS family protein PE_PGRS54 
 mtr-u.5   25489148   uncharacterized PE-PGRS family protein PE_PGRS54 
 ppo-u.5   7473194   uncharacterized LOC7473194 
 ppo-u.5   7460729   uncharacterized LOC7460729 
 ath-u.5   AT5G55670   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-u.5   AT1G13190   RNA-binding (RRM/RBD/RNP motifs) family protein 
 vvi-u.5   100268141   uncharacterized LOC100268141 
 vvi-u.5   100246290   uncharacterized LOC100246290 
 sly-u.5   104649492   uncharacterized LOC104649492 
 sly-u.5   101251795   uncharacterized LOC101251795 
 sly-u.5   101251491   uncharacterized LOC101251491 
 osa-u.5   4345901   uncharacterized LOC4345901 
 osa-u.5   4347363   uncharacterized LOC4347363 
 zma-u.5   103641415   cleavage and polyadenylation specificity factor subunit 6 
 zma-u.5   100501712   uncharacterized LOC100501712 
 zma-u.5   103641426   cleavage and polyadenylation specificity factor subunit 6 

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Top 50 coexpressed genes to 100782869 (gma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100782869 (gma-u.5 coexpression data)

CoexMap"100782869"


gmaLOC100782869 | Entrez gene ID : 100782869    
Species gma mtr ppo ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 5 2 2 2 2 3 2 3 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG gmx03015 [list] [network] mRNA surveillance pathway (214 genes)
gmx03250 [list] [network] Viral life cycle - HIV-1 (58 genes)
GO BP
GO:0110104 [list] [network] mRNA alternative polyadenylation  (4 genes)  IEA  
GO CC
GO:0005847 [list] [network] mRNA cleavage and polyadenylation specificity factor complex  (14 genes)  IEA  
GO MF
GO:0003729 [list] [network] mRNA binding  (563 genes)  IEA  
Protein XP_040873737.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9  (predict for XP_040873737.1)
Subcellular
localization
TargetP
other 9  (predict for XP_040873737.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

gma-u.5
for
100782869

.
gma-r.7
for
100782869

.
gma-u.5
for
100813748

.
gma-u.5
for
100811056

.
gma-u.5
for
100813702

.
mtr-u.5
for
25489149

.
mtr-u.5
for
25489148

.
ppo-u.5
for
7473194

.
ppo-u.5
for
7460729

.
ath-u.5
for
AT5G55670

.
ath-u.5
for
AT1G13190

.
vvi-u.5
for
100268141

.
vvi-u.5
for
100246290

.
sly-u.5
for
104649492

.
sly-u.5
for
101251795

.
sly-u.5
for
101251491

.
osa-u.5
for
4345901

.
osa-u.5
for
4347363

.
zma-u.5
for
103641415

.
zma-u.5
for
100501712

.
zma-u.5
for
103641426

.


Ortholog ID: 2432
Species ath ath gma gma sly sly osa osa zma zma bra bra vvi vvi ppo ppo mtr mtr tae tae hvu ghi ghi bna bna cre sbi sbi sot cit cit bdi bdi nta nta
Symbol AT5G55670 AT1G13190 LOC100782869 LOC100811056 LOC104649492 LOC101251182 LOC4345901 LOC4347363 LOC103641415 LOC103641426 LOC103856971 LOC103851867 LOC100246290 LOC100268141 LOC7473194 LOC7460729 LOC25489148 LOC25489149 LOC123104075 LOC123112299 LOC123399127 LOC107898647 LOC121209632 LOC106389765 LOC106371392 CHLRE_08g384950v5 LOC8055363 LOC8067028 LOC102583609 LOC102628156 LOC102628557 LOC100827188 LOC100838039 LOC107759692 LOC107801425
Function* RNA-binding (RRM/RBD/RNP motifs) family protein RNA-binding (RRM/RBD/RNP motifs) family protein cleavage and polyadenylation specificity factor subunit 6 uncharacterized PE-PGRS family protein PE_PGRS46 uncharacterized LOC104649492 uncharacterized LOC101251182 uncharacterized LOC4345901 uncharacterized LOC4347363 cleavage and polyadenylation specificity factor subunit 6 cleavage and polyadenylation specificity factor subunit 6 cleavage and polyadenylation specificity factor subunit 6 cleavage and polyadenylation specificity factor subunit CG7185 uncharacterized LOC100246290 uncharacterized LOC100268141 uncharacterized LOC7473194 uncharacterized LOC7460729 uncharacterized PE-PGRS family protein PE_PGRS54 uncharacterized PE-PGRS family protein PE_PGRS54 translation initiation factor IF-2 cleavage and polyadenylation specificity factor subunit 6 translation initiation factor IF-2-like cleavage and polyadenylation specificity factor subunit 6 uncharacterized PE-PGRS family protein PE_PGRS54 cleavage and polyadenylation specificity factor subunit 6-like cleavage and polyadenylation specificity factor subunit 6 uncharacterized protein translation initiation factor IF-2 cleavage and polyadenylation specificity factor subunit 6 cleavage and polyadenylation specificity factor subunit 6 uncharacterized LOC102628156 uncharacterized LOC102628557 cleavage and polyadenylation specificity factor subunit 6 RNA-binding protein cabeza uncharacterized LOC107759692 uncharacterized LOC107801425
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 5
ath03015 mRNA surveillance pathway 5
ath03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 5
ath03015 mRNA surveillance pathway 4
ath03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 8
gma03015 mRNA surveillance pathway 6
gma03250 Viral life cycle - HIV-1 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03015 mRNA surveillance pathway 6
gma03040 Spliceosome 6
gma03250 Viral life cycle - HIV-1 4
gma04820 Cytoskeleton in muscle cells 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04626 Plant-pathogen interaction 2
sly04075 Plant hormone signal transduction 2
sly00592 alpha-Linolenic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 5
sly03015 mRNA surveillance pathway 4
sly03250 Viral life cycle - HIV-1 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 8
osa03015 mRNA surveillance pathway 3
osa03013 Nucleocytoplasmic transport 2
osa03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 4
zma03015 mRNA surveillance pathway 3
zma03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 9
zma03015 mRNA surveillance pathway 4
zma03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03015 mRNA surveillance pathway 2
bra03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 5
vvi03015 mRNA surveillance pathway 3
vvi03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 4
mtr03015 mRNA surveillance pathway 3
mtr03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 5
mtr03015 mRNA surveillance pathway 3
mtr03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 3
tae03250 Viral life cycle - HIV-1 3
tae03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 3
tae03250 Viral life cycle - HIV-1 3
tae04136 Autophagy - other 3
tae03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
ghi03015 mRNA surveillance pathway 2
ghi03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 4
ghi03250 Viral life cycle - HIV-1 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 6
bna03250 Viral life cycle - HIV-1 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 6
bna03250 Viral life cycle - HIV-1 6
bna04820 Cytoskeleton in muscle cells 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03015 mRNA surveillance pathway 3
sbi03040 Spliceosome 3
sbi03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 2
sbi03015 mRNA surveillance pathway 2
sbi03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 4
cit03015 mRNA surveillance pathway 2
cit03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 4
cit03015 mRNA surveillance pathway 2
cit03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 6
bdi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 7
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 835661 837877 100782869 100811056 104649492 101251182 4345901 4347363 103641415 103641426 103856971 103851867 100246290 100268141 7473194 7460729 25489148 25489149 123104075 123112299 123399127 107898647 121209632 106389765 106371392 66054544 8055363 8067028 102583609 102628156 102628557 100827188 100838039 107759692 107801425
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