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Orthologous genes in OrthoFinder**

Species Gene Description
 gma-u.5   100799377   cleavage stimulation factor subunit 77 
 gma-r.7   100799377   cleavage stimulation factor subunit 77 
 gma-m.5   100799377   cleavage stimulation factor subunit 77 
 mtr-u.5   11408840   cleavage stimulation factor subunit 77 
 ppo-u.5   7465490   cleavage stimulation factor subunit 77 
 ath-u.5   CSTF77   Tetratricopeptide repeat (TPR)-like superfamily protein 
 bra-r.6   103835942   cleavage stimulation factor subunit 77 
 vvi-u.5   100262033   cleavage stimulation factor subunit 77 
 ghi-r.1   107903363   cleavage stimulation factor subunit 77 
 ghi-r.1   107942974   cleavage stimulation factor subunit 77 
 bna-r.1   106389262   cleavage stimulation factor subunit 77 
 bna-r.1   106391530   cleavage stimulation factor subunit 77 
 bna-r.1   106387632   cleavage stimulation factor subunit 77-like 
 cit-r.1   102629682   cleavage stimulation factor subunit 77 
 sly-u.5   101249869   cleavage stimulation factor subunit 77 
 sot-r.1   102602868   cleavage stimulation factor subunit 77 
 nta-r.1   107798403   cleavage stimulation factor subunit 77 
 nta-r.1   107827044   cleavage stimulation factor subunit 77 
 osa-u.5   4352587   cleavage stimulation factor subunit 77 
 zma-u.5   100278777   uncharacterized LOC100278777 
 tae-r.2   123077153   cleavage stimulation factor subunit 77 
 tae-r.2   123068618   cleavage stimulation factor subunit 77 
 tae-r.2   123060144   cleavage stimulation factor subunit 77 
 hvu-r.1   123442691   cleavage stimulation factor subunit 77 
 sbi-r.1   8066574   cleavage stimulation factor subunit 77 
 bdi-r.1   100838953   cleavage stimulation factor subunit 77 
 cre-r.1   CHLRE_12g506050v5   uncharacterized protein 

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Top 50 coexpressed genes to 100799377 (gma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100799377 (gma-u.5 coexpression data)

CoexMap"100799377"


gmaLOC100799377 | Entrez gene ID : 100799377      
Species gma mtr ppo ath bra vvi ghi bna cit sly sot nta osa zma tae hvu sbi bdi cre
Paralog 3 1 1 1 1 1 2 3 1 1 1 2 1 1 3 1 1 1 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG gmx03015 [list] [network] mRNA surveillance pathway (214 genes)
GO BP
GO:0031124 [list] [network] mRNA 3'-end processing  (26 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (5531 genes)  IEA  
GO MF
GO:0003729 [list] [network] mRNA binding  (563 genes)  IEA  
GO:0005515 [list] [network] protein binding  (7243 genes)  IEA  
Protein XP_006604052.1 [sequence] [blastp]
XP_040868947.1 [sequence] [blastp]
XP_040868948.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 4,  nucl 4,  mito 1,  pero 1,  golg 1  (predict for XP_006604052.1)
cyto 4,  nucl 4,  mito 1,  pero 1,  golg 1  (predict for XP_040868947.1)
cyto 4,  nucl 4,  mito 1,  pero 1,  golg 1  (predict for XP_040868948.1)
Subcellular
localization
TargetP
other 9  (predict for XP_006604052.1)
other 9  (predict for XP_040868947.1)
other 9  (predict for XP_040868948.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

gma-u.5
for
100799377
gma-r.7
for
100799377
gma-m.5
for
100799377
mtr-u.5
for
11408840
ppo-u.5
for
7465490
ath-u.5
for
CSTF77
bra-r.6
for
103835942
vvi-u.5
for
100262033
ghi-r.1
for
107903363
ghi-r.1
for
107942974
bna-r.1
for
106389262
bna-r.1
for
106391530
bna-r.1
for
106387632
cit-r.1
for
102629682
sly-u.5
for
101249869
sot-r.1
for
102602868
nta-r.1
for
107798403
nta-r.1
for
107827044
osa-u.5
for
4352587
zma-u.5
for
100278777
tae-r.2
for
123077153
tae-r.2
for
123068618
tae-r.2
for
123060144
hvu-r.1
for
123442691
sbi-r.1
for
8066574
bdi-r.1
for
100838953
cre-r.1
for
CHLRE_12g506050v5


Ortholog ID: 10461
Species gma mtr ppo ath bra vvi ghi ghi bna bna bna cit sly sot nta nta osa zma tae tae tae hvu sbi bdi cre
Symbol LOC100799377 LOC11408840 LOC7465490 CSTF77 LOC103835942 LOC100262033 LOC107903363 LOC107942974 LOC106389262 LOC106391530 LOC106387632 LOC102629682 LOC101249869 LOC102602868 LOC107798403 LOC107827044 LOC4352587 LOC100278777 LOC123077153 LOC123068618 LOC123060144 LOC123442691 LOC8066574 LOC100838953 CHLRE_12g506050v5
Function* cleavage stimulation factor subunit 77 cleavage stimulation factor subunit 77 cleavage stimulation factor subunit 77 Tetratricopeptide repeat (TPR)-like superfamily protein cleavage stimulation factor subunit 77 cleavage stimulation factor subunit 77 cleavage stimulation factor subunit 77 cleavage stimulation factor subunit 77 cleavage stimulation factor subunit 77 cleavage stimulation factor subunit 77 cleavage stimulation factor subunit 77-like cleavage stimulation factor subunit 77 cleavage stimulation factor subunit 77 cleavage stimulation factor subunit 77 cleavage stimulation factor subunit 77 cleavage stimulation factor subunit 77 cleavage stimulation factor subunit 77 uncharacterized LOC100278777 cleavage stimulation factor subunit 77 cleavage stimulation factor subunit 77 cleavage stimulation factor subunit 77 cleavage stimulation factor subunit 77 cleavage stimulation factor subunit 77 cleavage stimulation factor subunit 77 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03015 mRNA surveillance pathway 2
gma04144 Endocytosis 2
gma04517 IgSF CAM signaling 2
gma05100 Bacterial invasion of epithelial cells 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03015 mRNA surveillance pathway 2
ppo03013 Nucleocytoplasmic transport 2
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03082 ATP-dependent chromatin remodeling 3
ath03015 mRNA surveillance pathway 2
ath04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03018 RNA degradation 2
vvi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00500 Starch and sucrose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04142 Lysosome 3
sly04144 Endocytosis 3
sly05100 Bacterial invasion of epithelial cells 3
sly03040 Spliceosome 2
sly04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03015 mRNA surveillance pathway 2
nta03018 RNA degradation 2
nta00350 Tyrosine metabolism 2
nta00360 Phenylalanine metabolism 2
nta00380 Tryptophan metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 5
nta03015 mRNA surveillance pathway 2
nta00450 Selenocompound metabolism 2
nta03008 Ribosome biogenesis in eukaryotes 2
nta04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 3
tae03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 5
hvu03015 mRNA surveillance pathway 3
hvu03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03013 Nucleocytoplasmic transport 4
sbi03040 Spliceosome 2
sbi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03460 Fanconi anemia pathway 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100799377 11408840 7465490 838354 103835942 100262033 107903363 107942974 106389262 106391530 106387632 102629682 101249869 102602868 107798403 107827044 4352587 100278777 123077153 123068618 123060144 123442691 8066574 100838953 5716476
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