ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
gma-u.5	100815184	probable polygalacturonase
gma-r.7	100815184	probable polygalacturonase
gma-u.5	100806574	probable polygalacturonase
gma-u.5	100801823	probable polygalacturonase
mtr-u.5	11420255	probable polygalacturonase
mtr-u.5	25488046	probable polygalacturonase
ppo-u.5	18101890	probable polygalacturonase
ppo-u.5	7477215	probable polygalacturonase
ath-u.5	AT3G06770	Pectin lyase-like superfamily protein
ath-u.5	AT3G16850	Pectin lyase-like superfamily protein
ath-u.5	AT5G49215	Pectin lyase-like superfamily protein
bra-r.6	103869730	probable polygalacturonase
bra-r.6	103875025	probable polygalacturonase
bra-r.6	103854580	probable polygalacturonase
vvi-u.5	109122642	probable polygalacturonase
vvi-u.5	100241496	probable polygalacturonase
vvi-u.5	100247060	probable polygalacturonase
ghi-r.1	107926375	probable polygalacturonase
ghi-r.1	107896644	probable polygalacturonase
ghi-r.1	107891850	probable polygalacturonase
bna-r.1	106452075	probable polygalacturonase
bna-r.1	106411294	probable polygalacturonase
bna-r.1	106347677	probable polygalacturonase
cit-r.1	102624542	probable polygalacturonase
sly-u.5	101268765	probable polygalacturonase
sly-u.5	101264974	probable polygalacturonase
sot-r.1	102598202	probable polygalacturonase
sot-r.1	102580232	probable polygalacturonase-like
nta-r.1	107811919	putative polygalacturonase
nta-r.1	107776286	putative polygalacturonase
nta-r.1	107764241	putative polygalacturonase
osa-u.5	4351055	probable polygalacturonase
osa-u.5	4352486	probable polygalacturonase
zma-u.5	100191454	uncharacterized LOC100191454
zma-u.5	100282607	polygalacturonase
tae-r.2	123096876	probable polygalacturonase
tae-r.2	123102593	probable polygalacturonase
tae-r.2	123110779	probable polygalacturonase
hvu-r.1	123395463	probable polygalacturonase
sbi-r.1	8070181	probable polygalacturonase
bdi-r.1	100822979	probable polygalacturonase
bdi-r.1	100846127	probable polygalacturonase

Top 50 coexpressed genes to 100815184 (gma-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 100815184 (gma-u.5 coexpression data)

CoexMap"100815184"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0005975 [list] [network] carbohydrate metabolic process

(1295 genes)

IEA

GO CC

GO MF

GO:0004650 [list] [network] polygalacturonase activity

(99 genes)

IEA

Protein

XP_006604728.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 3, E.R. 3, cyto_E.R. 3, golg 1, cyto_pero 1

(predict for XP_006604728.1)

Subcellular
localization
TargetP

scret 9

(predict for XP_006604728.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	gma-u.5 for 100815184	gma-r.7 for 100815184	gma-u.5 for 100806574	gma-u.5 for 100801823	mtr-u.5 for 11420255	mtr-u.5 for 25488046	ppo-u.5 for 18101890	ppo-u.5 for 7477215	ath-u.5 for AT3G06770	ath-u.5 for AT3G16850	ath-u.5 for AT5G49215	bra-r.6 for 103869730	bra-r.6 for 103875025	bra-r.6 for 103854580	vvi-u.5 for 109122642	vvi-u.5 for 100241496	vvi-u.5 for 100247060	ghi-r.1 for 107926375	ghi-r.1 for 107896644	ghi-r.1 for 107891850	bna-r.1 for 106452075	bna-r.1 for 106411294	bna-r.1 for 106347677	cit-r.1 for 102624542	sly-u.5 for 101268765	sly-u.5 for 101264974	sot-r.1 for 102598202	sot-r.1 for 102580232	nta-r.1 for 107811919	nta-r.1 for 107776286	nta-r.1 for 107764241	osa-u.5 for 4351055	osa-u.5 for 4352486	zma-u.5 for 100191454	zma-u.5 for 100282607	tae-r.2 for 123096876	tae-r.2 for 123102593	tae-r.2 for 123110779	hvu-r.1 for 123395463	sbi-r.1 for 8070181	bdi-r.1 for 100822979	bdi-r.1 for 100846127

Ortholog

Ortholog ID: 2332

Species

gma

mtr

ppo

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

Function^*

probable polygalacturonase

Pectin lyase-like superfamily protein

probable polygalacturonase

probable polygalacturonase-like

putative polygalacturonase

probable polygalacturonase

uncharacterized LOC100191454

polygalacturonase

probable polygalacturonase

Coexmap

Please wait a moment.

Coexpression

Please wait a moment.

KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00520	Amino sugar and nucleotide sugar metabolism	2
ppo00100	Steroid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04145	Phagosome	4
sot04517	IgSF CAM signaling	4
sot04814	Motor proteins	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00760	Nicotinate and nicotinamide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00520	Amino sugar and nucleotide sugar metabolism	4
osa01250	Biosynthesis of nucleotide sugars	4
osa04144	Endocytosis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04145	Phagosome	2
zma04517	IgSF CAM signaling	2
zma04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00511	Other glycan degradation	3
tae00513	Various types of N-glycan biosynthesis	3
tae00520	Amino sugar and nucleotide sugar metabolism	3
tae00531	Glycosaminoglycan degradation	3
tae00600	Sphingolipid metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00511	Other glycan degradation	3
tae00513	Various types of N-glycan biosynthesis	3
tae00520	Amino sugar and nucleotide sugar metabolism	3
tae00531	Glycosaminoglycan degradation	3
tae00600	Sphingolipid metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04626	Plant-pathogen interaction	2
sbi00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04141	Protein processing in endoplasmic reticulum	2

Expression

Expression pattern

Entrez Gene ID^*

100801823

100777503

11420255

25488046

18101890

7477215

819862

820938

834981

103869730

103875025

103859685

109122642

100241496

100247060

107896644

107888934

107940911

106385691

106403076

106439444

102624542

101268765

101264974

102598202

102580232

107776286

107764241

142179336

4351055

4352486

100191454

100282607

123096876

123110779

123091797

123395463

8070181

100822979

100846127

The preparation time of this page was 0.2 [sec].


Species	gma	mtr	ppo	ath	bra	vvi	ghi	bna	cit	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	4	2	2	3	3	3	3	3	1	2	2	3	2	2	3	1	1	2	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100815184 (gma-u.5 coexpression data)

Top 50 enrichment test to 100815184 (gma-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**