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Orthologous genes in OrthoFinder**

Species Gene Description
 gma-u.5   100816768   pentatricopeptide repeat-containing protein At2g30780 
 gma-r.7   100816768   pentatricopeptide repeat-containing protein At2g30780 
 gma-u.5   100792116   pentatricopeptide repeat-containing protein At2g30780 
 mtr-u.5   11436413   pentatricopeptide repeat-containing protein At2g30780 
 mtr-u.5   11418299   pentatricopeptide repeat-containing protein At2g30780 
 ppo-u.5   7460365   pentatricopeptide repeat-containing protein At2g30780 
 ath-u.5   AT2G30780   Tetratricopeptide repeat (TPR)-like superfamily protein 
 ath-u.5   AT2G48000   Pentatricopeptide repeat (PPR) superfamily protein 
 vvi-u.5   100256237   pentatricopeptide repeat-containing protein At2g30780 
 sly-u.5   101266044   pentatricopeptide repeat-containing protein At2g30780 
 osa-u.5   4338765   pentatricopeptide repeat-containing protein At2g30780-like 
 zma-u.5   103630349   pentatricopeptide repeat-containing protein At2g30780 

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Top 50 coexpressed genes to 100816768 (gma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100816768 (gma-u.5 coexpression data)

CoexMap"100816768"


gmaLOC100816768 | Entrez gene ID : 100816768      
Species gma mtr ppo ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 3 2 1 2 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0003729 [list] [network] mRNA binding  (563 genes)  IEA  
GO:0005515 [list] [network] protein binding  (7243 genes)  IEA  
Protein XP_003553441.1 [sequence] [blastp]
XP_040868504.1 [sequence] [blastp]
XP_040868505.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9,  mito 1  (predict for XP_003553441.1)
mito 6,  chlo 4  (predict for XP_040868504.1)
mito 6,  chlo 4  (predict for XP_040868505.1)
Subcellular
localization
TargetP
mito 8  (predict for XP_003553441.1)
mito 8  (predict for XP_040868504.1)
mito 8  (predict for XP_040868505.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

gma-u.5
for
100816768

.
gma-r.7
for
100816768

.
gma-u.5
for
100792116

.
mtr-u.5
for
11436413

.
mtr-u.5
for
11418299

.
ppo-u.5
for
7460365

.
ath-u.5
for
AT2G30780

.
ath-u.5
for
AT2G48000

.
vvi-u.5
for
100256237

.
sly-u.5
for
101266044

.
osa-u.5
for
4338765

.
zma-u.5
for
103630349

.


Ortholog ID: 10685
Species ath ath gma gma sly osa zma bra vvi ppo mtr mtr hvu ghi ghi bna sbi sot cit bdi nta nta
Symbol AT2G48000 AT2G30780 LOC100792116 LOC100816768 LOC101266044 LOC4338765 LOC103630349 LOC103865071 LOC100256237 LOC7460365 LOC11436413 LOC11418299 LOC123441379 LOC107952199 LOC107913146 LOC106426381 LOC8076944 LOC102601662 LOC102617868 LOC100843861 LOC107817545 LOC107778650
Function* Pentatricopeptide repeat (PPR) superfamily protein Tetratricopeptide repeat (TPR)-like superfamily protein pentatricopeptide repeat-containing protein At2g30780 pentatricopeptide repeat-containing protein At2g30780 pentatricopeptide repeat-containing protein At2g30780 pentatricopeptide repeat-containing protein At2g30780-like pentatricopeptide repeat-containing protein At2g30780 pentatricopeptide repeat-containing protein At2g30780 pentatricopeptide repeat-containing protein At2g30780 pentatricopeptide repeat-containing protein At2g30780 pentatricopeptide repeat-containing protein At2g30780 pentatricopeptide repeat-containing protein At2g30780 pentatricopeptide repeat-containing protein At2g30780-like pentatricopeptide repeat-containing protein At2g30780 pentatricopeptide repeat-containing protein At2g30780 pentatricopeptide repeat-containing protein At2g30780 pentatricopeptide repeat-containing protein At2g30780 pentatricopeptide repeat-containing protein At2g30780 pentatricopeptide repeat-containing protein At2g30780 pentatricopeptide repeat-containing protein At2g30780 pentatricopeptide repeat-containing protein At2g30780 pentatricopeptide repeat-containing protein At2g30780
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 4
gma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr01200 Carbon metabolism 3
mtr04120 Ubiquitin mediated proteolysis 2
mtr00010 Glycolysis / Gluconeogenesis 2
mtr00620 Pyruvate metabolism 2
mtr00630 Glyoxylate and dicarboxylate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 7
mtr03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00561 Glycerolipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 3
bdi03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 6
nta03018 RNA degradation 2
nta04016 MAPK signaling pathway - plant 2
nta04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 4
nta03018 RNA degradation 2
nta00780 Biotin metabolism 2
nta01240 Biosynthesis of cofactors 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 819412 817629 100792116 100816768 101266044 4338765 103630349 103865071 100256237 7460365 11436413 11418299 123441379 107952199 107913146 106426381 8076944 102601662 102617868 100843861 107817545 107778650
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