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Orthologous genes in OrthoFinder**

Species Gene Description
 bdi-r.1   100828176   pentatricopeptide repeat-containing protein At5g39980, chloroplastic 
 tae-r.2   123062494   pentatricopeptide repeat-containing protein At5g39980, chloroplastic 
 hvu-r.1   123444979   pentatricopeptide repeat-containing protein At5g39980, chloroplastic 
 osa-u.5   4327403   pentatricopeptide repeat-containing protein At5g39980, chloroplastic 
 sbi-r.1   8057752   pentatricopeptide repeat-containing protein At5g39980, chloroplastic 
 ath-u.5   AT5G39980   Tetratricopeptide repeat (TPR)-like superfamily protein 
 gma-u.5   100784025   pentatricopeptide repeat-containing protein At5g39980, chloroplastic 
 gma-u.5   100782934   pentatricopeptide repeat-containing protein At5g39980, chloroplastic 
 sly-u.5   101262164   pentatricopeptide repeat-containing protein 
 bra-r.6   103850160   pentatricopeptide repeat-containing protein At5g39980, chloroplastic 
 vvi-u.5   100255941   pentatricopeptide repeat-containing protein At5g39980, chloroplastic 
 ppo-u.5   7495943   pentatricopeptide repeat-containing protein At5g39980, chloroplastic 
 mtr-u.5   11437358   pentatricopeptide repeat-containing protein At5g39980, chloroplastic 
 ghi-r.1   107955542   pentatricopeptide repeat-containing protein At5g39980, chloroplastic 
 ghi-r.1   107958612   pentatricopeptide repeat-containing protein At5g39980, chloroplastic 
 bna-r.1   106352680   pentatricopeptide repeat-containing protein At5g39980, chloroplastic 
 bna-r.1   111212552   pentatricopeptide repeat-containing protein At5g39980, chloroplastic 
 sot-r.1   102597895   pentatricopeptide repeat-containing protein At5g39980, chloroplastic 
 cit-r.1   102615243   pentatricopeptide repeat-containing protein At5g39980, chloroplastic 
 nta-r.1   107826375   uncharacterized LOC107826375 
 nta-r.1   107816244   uncharacterized LOC107816244 

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Top 50 coexpressed genes to 100828176 (bdi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100828176 (bdi-r.1 coexpression data)

CoexMap"100828176"


bdiLOC100828176 | Entrez gene ID : 100828176      
Species bdi tae hvu osa sbi ath gma sly bra vvi ppo mtr ghi bna sot cit nta zma cre
Paralog 1 1 1 1 1 1 2 1 1 1 1 1 2 2 1 1 2 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0005515 [list] [network] protein binding  (4040 genes)  IEA  
Protein XP_003564540.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 8,  nucl 1,  mito 1,  cysk 1,  cysk_nucl 1  (predict for XP_003564540.1)
Subcellular
localization
TargetP
chlo 6  (predict for XP_003564540.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bdi-r.1
for
100828176
tae-r.2
for
123062494
hvu-r.1
for
123444979
osa-u.5
for
4327403
sbi-r.1
for
8057752
ath-u.5
for
AT5G39980
gma-u.5
for
100784025
gma-u.5
for
100782934
sly-u.5
for
101262164
bra-r.6
for
103850160
vvi-u.5
for
100255941
ppo-u.5
for
7495943
mtr-u.5
for
11437358
ghi-r.1
for
107955542
ghi-r.1
for
107958612
bna-r.1
for
106352680
bna-r.1
for
111212552
sot-r.1
for
102597895
cit-r.1
for
102615243
nta-r.1
for
107826375
nta-r.1
for
107816244


Ortholog ID: 11747
Species bdi tae hvu osa sbi ath gma gma sly bra vvi ppo mtr ghi ghi bna bna sot cit nta nta
Symbol LOC100828176 LOC123062494 LOC123444979 LOC4327403 LOC8057752 AT5G39980 LOC100784025 LOC100782934 LOC101262164 LOC103850160 LOC100255941 LOC7495943 LOC11437358 LOC107955542 LOC107958612 LOC106352680 LOC111212552 LOC102597895 LOC102615243 LOC107826375 LOC107816244
Function* pentatricopeptide repeat-containing protein At5g39980, chloroplastic pentatricopeptide repeat-containing protein At5g39980, chloroplastic pentatricopeptide repeat-containing protein At5g39980, chloroplastic pentatricopeptide repeat-containing protein At5g39980, chloroplastic pentatricopeptide repeat-containing protein At5g39980, chloroplastic Tetratricopeptide repeat (TPR)-like superfamily protein pentatricopeptide repeat-containing protein At5g39980, chloroplastic pentatricopeptide repeat-containing protein At5g39980, chloroplastic pentatricopeptide repeat-containing protein pentatricopeptide repeat-containing protein At5g39980, chloroplastic pentatricopeptide repeat-containing protein At5g39980, chloroplastic pentatricopeptide repeat-containing protein At5g39980, chloroplastic pentatricopeptide repeat-containing protein At5g39980, chloroplastic pentatricopeptide repeat-containing protein At5g39980, chloroplastic pentatricopeptide repeat-containing protein At5g39980, chloroplastic pentatricopeptide repeat-containing protein At5g39980, chloroplastic pentatricopeptide repeat-containing protein At5g39980, chloroplastic pentatricopeptide repeat-containing protein At5g39980, chloroplastic pentatricopeptide repeat-containing protein At5g39980, chloroplastic uncharacterized LOC107826375 uncharacterized LOC107816244
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 5
tae00906 Carotenoid biosynthesis 3
tae00600 Sphingolipid metabolism 2
tae04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04141 Protein processing in endoplasmic reticulum 3
gma04626 Plant-pathogen interaction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100828176 123062494 123444979 4327403 8057752 833995 100784025 100782934 101262164 103850160 100255941 7495943 11437358 107955542 107958612 106352680 111212552 102597895 102615243 107826375 107816244
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