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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107955542   pentatricopeptide repeat-containing protein At5g39980, chloroplastic 
 ghi-r.1   107958612   pentatricopeptide repeat-containing protein At5g39980, chloroplastic 
 ath-u.5   AT5G39980   Tetratricopeptide repeat (TPR)-like superfamily protein 
 bra-r.6   103850160   pentatricopeptide repeat-containing protein At5g39980, chloroplastic 
 bna-r.1   106352680   pentatricopeptide repeat-containing protein At5g39980, chloroplastic 
 bna-r.1   111212552   pentatricopeptide repeat-containing protein At5g39980, chloroplastic 
 cit-r.1   102615243   pentatricopeptide repeat-containing protein At5g39980, chloroplastic 
 gma-u.5   100784025   pentatricopeptide repeat-containing protein At5g39980, chloroplastic 
 gma-u.5   100782934   pentatricopeptide repeat-containing protein At5g39980, chloroplastic 
 vvi-u.5   100255941   pentatricopeptide repeat-containing protein At5g39980, chloroplastic 
 ppo-u.5   7495943   pentatricopeptide repeat-containing protein At5g39980, chloroplastic 
 mtr-u.5   11437358   pentatricopeptide repeat-containing protein At5g39980, chloroplastic 
 sly-u.5   101262164   pentatricopeptide repeat-containing protein 
 sot-r.1   102597895   pentatricopeptide repeat-containing protein At5g39980, chloroplastic 
 nta-r.1   107816244   uncharacterized LOC107816244 
 nta-r.1   107826375   uncharacterized LOC107826375 
 osa-u.5   4327403   pentatricopeptide repeat-containing protein At5g39980, chloroplastic 
 tae-r.2   123062494   pentatricopeptide repeat-containing protein At5g39980, chloroplastic 
 hvu-r.1   123444979   pentatricopeptide repeat-containing protein At5g39980, chloroplastic 
 sbi-r.1   8057752   pentatricopeptide repeat-containing protein At5g39980, chloroplastic 
 bdi-r.1   100828176   pentatricopeptide repeat-containing protein At5g39980, chloroplastic 

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Top 50 coexpressed genes to 107955542 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107955542 (ghi-r.1 coexpression data)

CoexMap"107955542"


ghiLOC107955542 | Entrez gene ID : 107955542    
Species ghi ath bra bna cit gma vvi ppo mtr sly sot nta osa tae hvu sbi bdi zma cre
Paralog 2 1 1 2 1 2 1 1 1 1 1 2 1 1 1 1 1 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0005515 [list] [network] protein binding  (10797 genes)  IEA  
Protein XP_016746824.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9  (predict for XP_016746824.1)
Subcellular
localization
TargetP
chlo 8  (predict for XP_016746824.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107955542
ghi-r.1
for
107958612
ath-u.5
for
AT5G39980
bra-r.6
for
103850160
bna-r.1
for
106352680
bna-r.1
for
111212552
cit-r.1
for
102615243
gma-u.5
for
100784025
gma-u.5
for
100782934
vvi-u.5
for
100255941
ppo-u.5
for
7495943
mtr-u.5
for
11437358
sly-u.5
for
101262164
sot-r.1
for
102597895
nta-r.1
for
107816244
nta-r.1
for
107826375
osa-u.5
for
4327403
tae-r.2
for
123062494
hvu-r.1
for
123444979
sbi-r.1
for
8057752
bdi-r.1
for
100828176


Ortholog ID: 11747
Species ghi ghi ath bra bna bna cit gma gma vvi ppo mtr sly sot nta nta osa tae hvu sbi bdi
Symbol LOC107955542 LOC107958612 AT5G39980 LOC103850160 LOC106352680 LOC111212552 LOC102615243 LOC100784025 LOC100782934 LOC100255941 LOC7495943 LOC11437358 LOC101262164 LOC102597895 LOC107816244 LOC107826375 LOC4327403 LOC123062494 LOC123444979 LOC8057752 LOC100828176
Function* pentatricopeptide repeat-containing protein At5g39980, chloroplastic pentatricopeptide repeat-containing protein At5g39980, chloroplastic Tetratricopeptide repeat (TPR)-like superfamily protein pentatricopeptide repeat-containing protein At5g39980, chloroplastic pentatricopeptide repeat-containing protein At5g39980, chloroplastic pentatricopeptide repeat-containing protein At5g39980, chloroplastic pentatricopeptide repeat-containing protein At5g39980, chloroplastic pentatricopeptide repeat-containing protein At5g39980, chloroplastic pentatricopeptide repeat-containing protein At5g39980, chloroplastic pentatricopeptide repeat-containing protein At5g39980, chloroplastic pentatricopeptide repeat-containing protein At5g39980, chloroplastic pentatricopeptide repeat-containing protein At5g39980, chloroplastic pentatricopeptide repeat-containing protein pentatricopeptide repeat-containing protein At5g39980, chloroplastic uncharacterized LOC107816244 uncharacterized LOC107826375 pentatricopeptide repeat-containing protein At5g39980, chloroplastic pentatricopeptide repeat-containing protein At5g39980, chloroplastic pentatricopeptide repeat-containing protein At5g39980, chloroplastic pentatricopeptide repeat-containing protein At5g39980, chloroplastic pentatricopeptide repeat-containing protein At5g39980, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04141 Protein processing in endoplasmic reticulum 3
gma04626 Plant-pathogen interaction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 5
tae00906 Carotenoid biosynthesis 3
tae00600 Sphingolipid metabolism 2
tae04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107955542 107958612 833995 103850160 106352680 111212552 102615243 100784025 100782934 100255941 7495943 11437358 101262164 102597895 107816244 107826375 4327403 123062494 123444979 8057752 100828176
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