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Orthologous genes in OrthoFinder**

Species Gene Description
 bdi-r.1   100829752   pentatricopeptide repeat-containing protein At3g46790, chloroplastic 
 tae-r.2   123180457   putative pentatricopeptide repeat-containing protein At3g23330 
 hvu-r.1   123424951   pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like 
 osa-u.5   4343078   pentatricopeptide repeat-containing protein CRR2, chloroplastic 
 zma-u.5   103632264   putative pentatricopeptide repeat-containing protein At3g23330 
 sbi-r.1   8059732   pentatricopeptide repeat-containing protein At3g12770 
 gma-u.5   100806973   pentatricopeptide repeat-containing protein At3g57430, chloroplastic 
 sly-u.5   101265587   putative pentatricopeptide repeat-containing protein At3g23330 
 mtr-u.5   11431200   pentatricopeptide repeat-containing protein At3g12770 
 sot-r.1   102579044   putative pentatricopeptide repeat-containing protein At3g11460 
 nta-r.1   107806850   pentatricopeptide repeat-containing protein At5g27110-like 
 nta-r.1   107809387   pentatricopeptide repeat-containing protein At5g27110 

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Top 50 coexpressed genes to 100829752 (bdi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100829752 (bdi-r.1 coexpression data)

CoexMap"100829752"


bdiLOC100829752 | Entrez gene ID : 100829752      
Species bdi tae hvu osa zma sbi gma sly mtr sot nta bra cre ppo ghi ath cit bna vvi
Paralog 1 1 1 1 1 1 1 1 1 1 2 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009451 [list] [network] RNA modification  (384 genes)  IEA  
GO CC
GO MF
GO:0003723 [list] [network] RNA binding  (1239 genes)  IEA  
GO:0005515 [list] [network] protein binding  (4040 genes)  IEA  
Protein XP_010238995.1 [sequence] [blastp]
XP_024312909.1 [sequence] [blastp]
XP_024312911.1 [sequence] [blastp]
XP_024312912.1 [sequence] [blastp]
XP_024312913.1 [sequence] [blastp]
XP_024312914.1 [sequence] [blastp]
XP_024312915.1 [sequence] [blastp]
Subcellular
localization
wolf
plas 5,  chlo 4,  E.R. 1,  pero 1  (predict for XP_010238995.1)
plas 5,  chlo 4,  E.R. 1,  pero 1  (predict for XP_024312909.1)
plas 5,  chlo 4,  E.R. 1,  pero 1  (predict for XP_024312911.1)
plas 5,  chlo 4,  E.R. 1,  pero 1  (predict for XP_024312912.1)
plas 5,  chlo 4,  E.R. 1,  pero 1  (predict for XP_024312913.1)
plas 5,  chlo 4,  E.R. 1,  pero 1  (predict for XP_024312914.1)
plas 5,  chlo 4,  E.R. 1,  pero 1  (predict for XP_024312915.1)
Subcellular
localization
TargetP
chlo 2  (predict for XP_010238995.1)
chlo 2  (predict for XP_024312909.1)
chlo 2  (predict for XP_024312911.1)
chlo 2  (predict for XP_024312912.1)
chlo 2  (predict for XP_024312913.1)
chlo 2  (predict for XP_024312914.1)
chlo 2  (predict for XP_024312915.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bdi-r.1
for
100829752
tae-r.2
for
123180457
hvu-r.1
for
123424951
osa-u.5
for
4343078
zma-u.5
for
103632264
sbi-r.1
for
8059732
gma-u.5
for
100806973
sly-u.5
for
101265587
mtr-u.5
for
11431200
sot-r.1
for
102579044
nta-r.1
for
107806850
nta-r.1
for
107809387


Ortholog ID: 12998
Species bdi tae hvu osa zma sbi gma sly mtr sot nta nta
Symbol LOC100829752 LOC123180457 LOC123424951 LOC4343078 LOC103632264 LOC8059732 LOC100806973 LOC101265587 LOC11431200 LOC102579044 LOC107806850 LOC107809387
Function* pentatricopeptide repeat-containing protein At3g46790, chloroplastic putative pentatricopeptide repeat-containing protein At3g23330 pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like pentatricopeptide repeat-containing protein CRR2, chloroplastic putative pentatricopeptide repeat-containing protein At3g23330 pentatricopeptide repeat-containing protein At3g12770 pentatricopeptide repeat-containing protein At3g57430, chloroplastic putative pentatricopeptide repeat-containing protein At3g23330 pentatricopeptide repeat-containing protein At3g12770 putative pentatricopeptide repeat-containing protein At3g11460 pentatricopeptide repeat-containing protein At5g27110-like pentatricopeptide repeat-containing protein At5g27110
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100829752 123180457 123424951 4343078 103632264 8059732 100806973 101265587 11431200 102579044 107806850 107809387
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