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Orthologous genes in OrthoFinder**

Species Gene Description
 nta-r.1  107809387  pentatricopeptide repeat-containing protein At5g27110 
 sly-u.5  101265587  putative pentatricopeptide repeat-containing protein At3g23330 
 gma-u.5  100806973  pentatricopeptide repeat-containing protein At3g57430, chloroplastic 
 mtr-u.5  11431200  pentatricopeptide repeat-containing protein At3g12770 
 osa-u.5  4343078  pentatricopeptide repeat-containing protein CRR2, chloroplastic 
 zma-u.5  103632264  putative pentatricopeptide repeat-containing protein At3g23330 

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Top 50 coexpressed genes to 107809387 (nta-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107809387 (nta-r.1 coexpression data)

CoexMap"107809387"


ntaLOC107809387 | Entrez gene ID : 107809387
Species nta sly gma mtr osa zma bdi hvu bra vvi cit bna ath ppo sbi ghi sot cre tae
Paralog 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009451 [list] [network] RNA modification  (732 genes)  IEA  
GO CC
GO:0043231 [list] [network] intracellular membrane-bounded organelle  (9561 genes)  IEA  
GO MF
GO:0003723 [list] [network] RNA binding  (2607 genes)  IEA  
GO:0005515 [list] [network] protein binding  (7685 genes)  IEA  
Protein XP_016489483.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  chlo_mito 4,  mito 2,  extr 1,  nucl 1,  cyto 1,  plas 1,  cyto_nucl 1,  nucl_plas 1,  cyto_plas 1  (predict for XP_016489483.2)
Subcellular
localization
TargetP
other 2  (predict for XP_016489483.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID
Other ID Link Target Reference

nta-r.1
for
107809387


sly-u.5
for
101265587


gma-u.5
for
100806973


mtr-u.5
for
11431200


osa-u.5
for
4343078


zma-u.5
for
103632264



Ortholog ID: 12998
Species nta nta sly sot gma mtr osa zma tae hvu sbi bdi
Symbol LOC107809387 LOC107806850 LOC101265587 LOC102579044 LOC100806973 LOC11431200 LOC4343078 LOC103632264 LOC123180457 LOC123424951 LOC8059732 LOC100829752
Function* pentatricopeptide repeat-containing protein At5g27110 pentatricopeptide repeat-containing protein At5g27110-like putative pentatricopeptide repeat-containing protein At3g23330 putative pentatricopeptide repeat-containing protein At3g11460 pentatricopeptide repeat-containing protein At3g57430, chloroplastic pentatricopeptide repeat-containing protein At3g12770 pentatricopeptide repeat-containing protein CRR2, chloroplastic putative pentatricopeptide repeat-containing protein At3g23330 putative pentatricopeptide repeat-containing protein At3g23330 pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like pentatricopeptide repeat-containing protein At3g12770 pentatricopeptide repeat-containing protein At3g46790, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107809387 107806850 101265587 102579044 100806973 11431200 4343078 103632264 123180457 123424951 8059732 100829752
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