ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
bdi-r.1	100830184	serine/arginine-rich SC35-like splicing factor SCL33
osa-u.5	4332903	serine/arginine-rich SC35-like splicing factor SCL28
osa-u.5	9268085	serine/arginine-rich SC35-like splicing factor SCL33
osa-u.5	4344009	serine/arginine-rich SC35-like splicing factor SCL33
zma-u.5	100285628	uncharacterized LOC100285628
zma-u.5	100272550	arginine/serine-rich splicing factor SCL28 transcript II
ath-u.5	SCL30A	SC35-like splicing factor 30A
ath-u.5	SCL33	SC35-like splicing factor 33
gma-u.5	100775883	serine/arginine-rich SC35-like splicing factor SCL30A
gma-u.5	100788749	serine/arginine-rich SC35-like splicing factor SCL28
gma-u.5	100795738	RNA recognition motif-containing protein
sly-u.5	101246661	putative serine/arginine-rich splicing factor
sly-u.5	101259473	serine/arginine-rich SC35-like splicing factor SCL33
vvi-u.5	100262434	uncharacterized LOC100262434
vvi-u.5	100263951	serine/arginine-rich SC35-like splicing factor SCL30A
vvi-u.5	100259677	serine/arginine-rich SC35-like splicing factor SCL33
ppo-u.5	7457708	serine/arginine-rich SC35-like splicing factor SCL33
ppo-u.5	7475944	serine/arginine-rich SC35-like splicing factor SCL28
ppo-u.5	18097234	serine/arginine-rich SC35-like splicing factor SCL33
mtr-u.5	11411739	serine/arginine-rich SC35-like splicing factor SCL28
mtr-u.5	11432730	serine/arginine-rich SC35-like splicing factor SCL33
mtr-u.5	25483590	serine/arginine-rich SC35-like splicing factor SCL33

Top 50 coexpressed genes to 100830184 (bdi-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 100830184 (bdi-r.1 coexpression data)

CoexMap"100830184"

[Cytoscape]

Annotation

functional annotation

KEGG

bdi03040 [list] [network] Spliceosome (282 genes)

GO BP

GO CC

GO MF

GO:0003723 [list] [network] RNA binding

(1239 genes)

IEA

Protein

XP_003562621.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 7, mito 2

(predict for XP_003562621.1)

Subcellular
localization
TargetP

chlo 8, mito 4

(predict for XP_003562621.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bdi-r.1 for 100830184	osa-u.5 for 4332903	osa-u.5 for 9268085	osa-u.5 for 4344009	zma-u.5 for 100285628	zma-u.5 for 100272550	ath-u.5 for SCL30A	ath-u.5 for SCL33	gma-u.5 for 100775883	gma-u.5 for 100788749	gma-u.5 for 100795738	sly-u.5 for 101246661	sly-u.5 for 101259473	vvi-u.5 for 100262434	vvi-u.5 for 100263951	vvi-u.5 for 100259677	ppo-u.5 for 7457708	ppo-u.5 for 7475944	ppo-u.5 for 18097234	mtr-u.5 for 11411739	mtr-u.5 for 11432730	mtr-u.5 for 25483590

Ortholog

Ortholog ID: 1234

Species

bdi

tae

hvu

osa

sbi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

SCL30A

SCL33

Function^*

serine/arginine-rich SC35-like splicing factor SCL28

serine/arginine-rich SC35-like splicing factor SCL30A

serine/arginine-rich SC35-like splicing factor SCL28

serine/arginine-rich SC35-like splicing factor SCL33

serine/arginine-rich SC35-like splicing factor SCL28

serine/arginine-rich SC35-like splicing factor SCL33

SC35-like splicing factor 30A

SC35-like splicing factor 33

serine/arginine-rich SC35-like splicing factor SCL28

heterogeneous nuclear ribonucleoprotein D-like

putative serine/arginine-rich splicing factor

serine/arginine-rich SC35-like splicing factor SCL33

serine/arginine-rich SC35-like splicing factor SCL30A

uncharacterized LOC100262434

serine/arginine-rich SC35-like splicing factor SCL33

serine/arginine-rich SC35-like splicing factor SCL28

serine/arginine-rich SC35-like splicing factor SCL30A

serine/arginine-rich SC35-like splicing factor SCL28

serine/arginine-rich SC35-like splicing factor SCL33

serine/arginine-rich SC35-like splicing factor SCL28

serine/arginine-rich SC35-like splicing factor SCL30A

serine/arginine-rich SC35-like splicing factor SCL33

serine/arginine-rich SC35-like splicing factor SCL28

serine/arginine-rich SC35-like splicing factor SCL30A

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03010	Ribosome	6
bdi03008	Ribosome biogenesis in eukaryotes	3
bdi03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03040	Spliceosome	3
tae03013	Nucleocytoplasmic transport	2
tae03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03008	Ribosome biogenesis in eukaryotes	5
hvu00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03030	DNA replication	2
osa03410	Base excision repair	2
osa03420	Nucleotide excision repair	2
osa03440	Homologous recombination	2
osa03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04141	Protein processing in endoplasmic reticulum	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03040	Spliceosome	4
sbi04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	9
ath03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	9

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	4
gma03082	ATP-dependent chromatin remodeling	4
gma03013	Nucleocytoplasmic transport	3
gma03015	mRNA surveillance pathway	3
gma03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	3
gma04016	MAPK signaling pathway - plant	2
gma04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	8
sly03010	Ribosome	3
sly03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	4
bra03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03040	Spliceosome	5
vvi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03040	Spliceosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	10

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	10

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03040	Spliceosome	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	10

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	5
bna00100	Steroid biosynthesis	2
bna00909	Sesquiterpenoid and triterpenoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03015	mRNA surveillance pathway	2
sot03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03040	Spliceosome	4
cit04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03010	Ribosome	7
cit03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	4
nta03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03040	Spliceosome	9
cre03013	Nucleocytoplasmic transport	2

Expression

Expression pattern

Entrez Gene ID^*

100829528

100833204

123092004

123085875

123448603

123425165

4332903

9268085

8063521

8080764

820559

841976

100788749

100816913

101246661

101259473

103829790

100263951

100262434

18106174

18097234

11432730

11411739

107901967

107897639

106345754

106452514

102588722

102599486

102626112

102613701

107782208

107797093

5715518

5719422

The preparation time of this page was 0.1 [sec].


Species	bdi	osa	zma	ath	gma	sly	vvi	ppo	mtr	hvu	bra	cit	bna	sbi	ghi	sot	nta	cre	tae
Paralog	1	3	2	2	3	2	3	3	3	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100830184 (bdi-r.1 coexpression data)

Top 50 enrichment test to 100830184 (bdi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**