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Orthologous genes in OrthoFinder**

Species Gene Description
 cit-r.1   102613701   serine/arginine-rich SC35-like splicing factor SCL33 
 ath-u.5   SCL30A   SC35-like splicing factor 30A 
 ath-u.5   SCL33   SC35-like splicing factor 33 
 gma-u.5   100775883   serine/arginine-rich SC35-like splicing factor SCL30A 
 gma-u.5   100788749   serine/arginine-rich SC35-like splicing factor SCL28 
 gma-u.5   100795738   RNA recognition motif-containing protein 
 vvi-u.5   100262434   uncharacterized LOC100262434 
 vvi-u.5   100263951   serine/arginine-rich SC35-like splicing factor SCL30A 
 vvi-u.5   100259677   serine/arginine-rich SC35-like splicing factor SCL33 
 ppo-u.5   7457708   serine/arginine-rich SC35-like splicing factor SCL33 
 ppo-u.5   7475944   serine/arginine-rich SC35-like splicing factor SCL28 
 ppo-u.5   18097234   serine/arginine-rich SC35-like splicing factor SCL33 
 mtr-u.5   11411739   serine/arginine-rich SC35-like splicing factor SCL28 
 mtr-u.5   11432730   serine/arginine-rich SC35-like splicing factor SCL33 
 mtr-u.5   25483590   serine/arginine-rich SC35-like splicing factor SCL33 
 sly-u.5   101246661   putative serine/arginine-rich splicing factor 
 sly-u.5   101259473   serine/arginine-rich SC35-like splicing factor SCL33 
 osa-u.5   4332903   serine/arginine-rich SC35-like splicing factor SCL28 
 osa-u.5   9268085   serine/arginine-rich SC35-like splicing factor SCL33 
 osa-u.5   4344009   serine/arginine-rich SC35-like splicing factor SCL33 
 zma-u.5   100285628   uncharacterized LOC100285628 
 zma-u.5   100272550   arginine/serine-rich splicing factor SCL28 transcript II 

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Top 50 coexpressed genes to 102613701 (cit-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 102613701 (cit-r.1 coexpression data)

CoexMap"102613701"


citLOC102613701 | Entrez gene ID : 102613701      
Species cit ath gma vvi ppo mtr sly osa zma bdi hvu bra bna sbi ghi sot nta cre tae
Paralog 1 2 3 3 3 3 2 3 2 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cit03040 [list] [network] Spliceosome (220 genes)
GO BP
GO:0000398 [list] [network] mRNA splicing, via spliceosome  (155 genes)  IEA  
GO CC
GO:0016607 [list] [network] nuclear speck  (13 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (4272 genes)  IEA  
GO MF
GO:0003723 [list] [network] RNA binding  (1117 genes)  IEA  
Protein XP_006488908.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9,  chlo 1,  plas 1  (predict for XP_006488908.1)
Subcellular
localization
TargetP
chlo 6,  mito 6  (predict for XP_006488908.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cit-r.1
for
102613701
ath-u.5
for
SCL30A
ath-u.5
for
SCL33
gma-u.5
for
100775883
gma-u.5
for
100788749
gma-u.5
for
100795738
vvi-u.5
for
100262434
vvi-u.5
for
100263951
vvi-u.5
for
100259677
ppo-u.5
for
7457708
ppo-u.5
for
7475944
ppo-u.5
for
18097234
mtr-u.5
for
11411739
mtr-u.5
for
11432730
mtr-u.5
for
25483590
sly-u.5
for
101246661
sly-u.5
for
101259473
osa-u.5
for
4332903
osa-u.5
for
9268085
osa-u.5
for
4344009
zma-u.5
for
100285628
zma-u.5
for
100272550


Ortholog ID: 1234
Species cit cit ath ath bra ghi ghi bna bna gma gma vvi vvi ppo ppo mtr mtr sly sly sot sot nta nta osa osa tae tae hvu hvu sbi sbi bdi bdi cre cre
Symbol LOC102626112 LOC102613701 SCL30A SCL33 LOC103829790 LOC107901967 LOC107897639 LOC106345754 LOC106452514 LOC100788749 LOC100816913 LOC100263951 LOC100262434 LOC18106174 LOC18097234 LOC11432730 LOC11411739 LOC101246661 LOC101259473 LOC102588722 LOC102599486 LOC107782208 LOC107797093 LOC4332903 LOC9268085 LOC123092004 LOC123085875 LOC123448603 LOC123425165 LOC8063521 LOC8080764 LOC100829528 LOC100833204 CHLRE_01g038650v5 CHLRE_13g586916v5
Function* serine/arginine-rich SC35-like splicing factor SCL33 serine/arginine-rich SC35-like splicing factor SCL33 SC35-like splicing factor 30A SC35-like splicing factor 33 serine/arginine-rich SC35-like splicing factor SCL33 serine/arginine-rich SC35-like splicing factor SCL30A serine/arginine-rich SC35-like splicing factor SCL28 serine/arginine-rich SC35-like splicing factor SCL33 serine/arginine-rich SC35-like splicing factor SCL33 serine/arginine-rich SC35-like splicing factor SCL28 heterogeneous nuclear ribonucleoprotein D-like serine/arginine-rich SC35-like splicing factor SCL30A uncharacterized LOC100262434 serine/arginine-rich SC35-like splicing factor SCL33 serine/arginine-rich SC35-like splicing factor SCL33 serine/arginine-rich SC35-like splicing factor SCL33 serine/arginine-rich SC35-like splicing factor SCL28 putative serine/arginine-rich splicing factor serine/arginine-rich SC35-like splicing factor SCL33 serine/arginine-rich SC35-like splicing factor SCL28 serine/arginine-rich SC35-like splicing factor SCL30A serine/arginine-rich SC35-like splicing factor SCL28 serine/arginine-rich SC35-like splicing factor SCL30A serine/arginine-rich SC35-like splicing factor SCL28 serine/arginine-rich SC35-like splicing factor SCL33 serine/arginine-rich SC35-like splicing factor SCL28 serine/arginine-rich SC35-like splicing factor SCL28 serine/arginine-rich SC35-like splicing factor SCL28 serine/arginine-rich SC35-like splicing factor SCL33 serine/arginine-rich SC35-like splicing factor SCL33 serine/arginine-rich SC35-like splicing factor SCL33 serine/arginine-rich SC35-like splicing factor SCL28 serine/arginine-rich SC35-like splicing factor SCL30A uncharacterized protein uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 4
cit04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 7
cit03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 9
ath03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 4
bra03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 5
bna00100 Steroid biosynthesis 2
bna00909 Sesquiterpenoid and triterpenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 4
gma03082 ATP-dependent chromatin remodeling 4
gma03013 Nucleocytoplasmic transport 3
gma03015 mRNA surveillance pathway 3
gma03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 3
gma04016 MAPK signaling pathway - plant 2
gma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 5
vvi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 8
sly03010 Ribosome 3
sly03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03015 mRNA surveillance pathway 2
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 4
nta03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03030 DNA replication 2
osa03410 Base excision repair 2
osa03420 Nucleotide excision repair 2
osa03440 Homologous recombination 2
osa03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04141 Protein processing in endoplasmic reticulum 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 3
tae03013 Nucleocytoplasmic transport 2
tae03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 5
hvu00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 4
sbi04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 6
bdi03008 Ribosome biogenesis in eukaryotes 3
bdi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 9
cre03013 Nucleocytoplasmic transport 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 102626112 102613701 820559 841976 103829790 107901967 107897639 106345754 106452514 100788749 100816913 100263951 100262434 18106174 18097234 11432730 11411739 101246661 101259473 102588722 102599486 107782208 107797093 4332903 9268085 123092004 123085875 123448603 123425165 8063521 8080764 100829528 100833204 5715518 5719422
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