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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107962942   serine/arginine-rich SC35-like splicing factor SCL30A 
 ghi-r.1   107916120   serine/arginine-rich SC35-like splicing factor SCL28 
 ghi-r.1   107948474   serine/arginine-rich SC35-like splicing factor SCL33 
 ghi-r.1   107899205   serine/arginine-rich SC35-like splicing factor SCL33 
 ath-u.5   SCL30A   SC35-like splicing factor 30A 
 ath-u.5   SCL33   SC35-like splicing factor 33 
 bra-r.6   103871046   serine/arginine-rich SC35-like splicing factor SCL33 
 bra-r.6   103870289   serine/arginine-rich SC35-like splicing factor SCL30A 
 bna-r.1   106377441   serine/arginine-rich SC35-like splicing factor SCL30A 
 bna-r.1   125609469   serine/arginine-rich SC35-like splicing factor SCL33 
 bna-r.1   125601966   serine/arginine-rich SC35-like splicing factor SCL33 
 cit-r.1   102613701   serine/arginine-rich SC35-like splicing factor SCL33 
 cit-r.1   102622414   serine/arginine-rich SC35-like splicing factor SCL28 
 cit-r.1   102626112   serine/arginine-rich SC35-like splicing factor SCL33 
 gma-u.5   100779321   RNA recognition motif-containing protein 
 gma-u.5   100788749   serine/arginine-rich SC35-like splicing factor SCL28 
 gma-u.5   100795738   RNA recognition motif-containing protein 
 vvi-u.5   100263951   serine/arginine-rich SC35-like splicing factor SCL30A 
 vvi-u.5   100262434   uncharacterized LOC100262434 
 vvi-u.5   100259677   serine/arginine-rich SC35-like splicing factor SCL33 
 ppo-u.5   18097234   serine/arginine-rich SC35-like splicing factor SCL33 
 ppo-u.5   18101709   serine/arginine-rich SC35-like splicing factor SCL28 
 ppo-u.5   18106174   serine/arginine-rich SC35-like splicing factor SCL33 
 mtr-u.5   25483590   serine/arginine-rich SC35-like splicing factor SCL33 
 mtr-u.5   11411739   serine/arginine-rich SC35-like splicing factor SCL28 
 mtr-u.5   11432730   serine/arginine-rich SC35-like splicing factor SCL33 
 sly-u.5   101259473   serine/arginine-rich SC35-like splicing factor SCL33 
 sly-u.5   101246661   putative serine/arginine-rich splicing factor 
 sot-r.1   102588722   serine/arginine-rich SC35-like splicing factor SCL28 
 sot-r.1   102599486   serine/arginine-rich SC35-like splicing factor SCL30A 
 sot-r.1   102600835   serine/arginine-rich SC35-like splicing factor SCL30A 
 nta-r.1   107819002   serine/arginine-rich SC35-like splicing factor SCL28 
 nta-r.1   107816142   serine/arginine-rich SC35-like splicing factor SCL30A 
 nta-r.1   107809179   serine/arginine-rich SC35-like splicing factor SCL30A 
 osa-u.5   4332903   serine/arginine-rich SC35-like splicing factor SCL28 
 osa-u.5   9268085   serine/arginine-rich SC35-like splicing factor SCL33 
 osa-u.5   4344009   serine/arginine-rich SC35-like splicing factor SCL33 
 zma-u.5   100285628   uncharacterized LOC100285628 
 zma-u.5   100272550   arginine/serine-rich splicing factor SCL28 transcript II 
 tae-r.2   123085875   serine/arginine-rich SC35-like splicing factor SCL28 
 tae-r.2   123044095   serine/arginine-rich SC35-like splicing factor SCL33 
 tae-r.2   123051967   serine/arginine-rich SC35-like splicing factor SCL33 
 hvu-r.1   123448603   serine/arginine-rich SC35-like splicing factor SCL28 
 hvu-r.1   123425165   serine/arginine-rich SC35-like splicing factor SCL33 
 sbi-r.1   8080788   serine/arginine-rich SC35-like splicing factor SCL28 
 sbi-r.1   8063521   serine/arginine-rich SC35-like splicing factor SCL33 
 sbi-r.1   8080764   serine/arginine-rich SC35-like splicing factor SCL33 
 bdi-r.1   100829528   serine/arginine-rich SC35-like splicing factor SCL28 
 bdi-r.1   100833204   serine/arginine-rich SC35-like splicing factor SCL30A 
 bdi-r.1   100830184   serine/arginine-rich SC35-like splicing factor SCL33 
 cre-r.1   CHLRE_01g038650v5   uncharacterized protein 
 cre-r.1   CHLRE_13g586916v5   uncharacterized protein 

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Top 50 coexpressed genes to 107962942 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107962942 (ghi-r.1 coexpression data)

CoexMap"107962942"


ghiLOC107962942 | Entrez gene ID : 107962942    
Species ghi ath bra bna cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 4 2 2 3 3 3 3 3 3 2 3 3 3 2 3 2 3 3 2
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ghi03040 [list] [network] Spliceosome (739 genes)
GO BP
GO:0000398 [list] [network] mRNA splicing, via spliceosome  (384 genes)  IEA  
GO CC
GO:0016607 [list] [network] nuclear speck  (38 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (13864 genes)  IEA  
GO MF
GO:0003723 [list] [network] RNA binding  (3053 genes)  IEA  
Protein XP_016755001.1 [sequence] [blastp]
XP_040971692.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 5,  mito 3,  nucl_plas 3  (predict for XP_016755001.1)
nucl 10  (predict for XP_040971692.1)
Subcellular
localization
TargetP
chlo 7,  mito 5  (predict for XP_016755001.1)
other 8  (predict for XP_040971692.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107962942
ghi-r.1
for
107916120
ghi-r.1
for
107948474
ghi-r.1
for
107899205
ath-u.5
for
SCL30A
ath-u.5
for
SCL33
bra-r.6
for
103871046
bra-r.6
for
103870289
bna-r.1
for
106377441
bna-r.1
for
125609469
bna-r.1
for
125601966
cit-r.1
for
102613701
cit-r.1
for
102622414
cit-r.1
for
102626112
gma-u.5
for
100779321
gma-u.5
for
100788749
gma-u.5
for
100795738
vvi-u.5
for
100263951
vvi-u.5
for
100262434
vvi-u.5
for
100259677
ppo-u.5
for
18097234
ppo-u.5
for
18101709
ppo-u.5
for
18106174
mtr-u.5
for
25483590
mtr-u.5
for
11411739
mtr-u.5
for
11432730
sly-u.5
for
101259473
sly-u.5
for
101246661
sot-r.1
for
102588722
sot-r.1
for
102599486
sot-r.1
for
102600835
nta-r.1
for
107819002
nta-r.1
for
107816142
nta-r.1
for
107809179
osa-u.5
for
4332903
osa-u.5
for
9268085
osa-u.5
for
4344009
zma-u.5
for
100285628
zma-u.5
for
100272550
tae-r.2
for
123085875
tae-r.2
for
123044095
tae-r.2
for
123051967
hvu-r.1
for
123448603
hvu-r.1
for
123425165
sbi-r.1
for
8080788
sbi-r.1
for
8063521
sbi-r.1
for
8080764
bdi-r.1
for
100829528
bdi-r.1
for
100833204
bdi-r.1
for
100830184
cre-r.1
for
CHLRE_01g038650v5
cre-r.1
for
CHLRE_13g586916v5


Ortholog ID: 1234
Species ghi ghi ghi ath ath bra bra bna bna bna cit cit cit gma gma gma vvi vvi vvi ppo ppo ppo mtr mtr mtr sly sly sot sot sot nta nta nta osa osa osa zma tae tae tae hvu hvu sbi sbi sbi bdi bdi bdi cre cre
Symbol LOC107962942 LOC107901967 LOC107897639 SCL30A SCL33 LOC103849767 LOC103829790 LOC106452514 LOC106402854 LOC106345754 LOC102613701 LOC102622414 LOC102626112 LOC100779321 LOC100788749 LOC100816913 LOC100263951 LOC100262434 LOC100259677 LOC18097234 LOC18106174 LOC18100597 LOC25483590 LOC11411739 LOC11432730 LOC101259473 LOC101246661 LOC102588722 LOC102599486 LOC102600835 LOC107797093 LOC107773072 LOC107782208 LOC4332903 LOC9268085 LOC4344009 LOC100193374 LOC123085875 LOC123092004 LOC123097399 LOC123448603 LOC123425165 LOC8080788 LOC8063521 LOC8080764 LOC100829528 LOC100833204 LOC100830184 CHLRE_01g038650v5 CHLRE_13g586916v5
Function* serine/arginine-rich SC35-like splicing factor SCL30A serine/arginine-rich SC35-like splicing factor SCL30A serine/arginine-rich SC35-like splicing factor SCL28 SC35-like splicing factor 30A SC35-like splicing factor 33 serine/arginine-rich SC35-like splicing factor SCL30A serine/arginine-rich SC35-like splicing factor SCL33 serine/arginine-rich SC35-like splicing factor SCL33 serine/arginine-rich SC35-like splicing factor SCL33 serine/arginine-rich SC35-like splicing factor SCL33 serine/arginine-rich SC35-like splicing factor SCL33 serine/arginine-rich SC35-like splicing factor SCL28 serine/arginine-rich SC35-like splicing factor SCL33 RNA recognition motif-containing protein serine/arginine-rich SC35-like splicing factor SCL28 heterogeneous nuclear ribonucleoprotein D-like serine/arginine-rich SC35-like splicing factor SCL30A uncharacterized LOC100262434 serine/arginine-rich SC35-like splicing factor SCL33 serine/arginine-rich SC35-like splicing factor SCL33 serine/arginine-rich SC35-like splicing factor SCL33 serine/arginine-rich SC35-like splicing factor SCL33 serine/arginine-rich SC35-like splicing factor SCL33 serine/arginine-rich SC35-like splicing factor SCL28 serine/arginine-rich SC35-like splicing factor SCL33 serine/arginine-rich SC35-like splicing factor SCL33 putative serine/arginine-rich splicing factor serine/arginine-rich SC35-like splicing factor SCL28 serine/arginine-rich SC35-like splicing factor SCL30A serine/arginine-rich SC35-like splicing factor SCL30A serine/arginine-rich SC35-like splicing factor SCL30A serine/arginine-rich SC35-like splicing factor SCL30A serine/arginine-rich SC35-like splicing factor SCL28 serine/arginine-rich SC35-like splicing factor SCL28 serine/arginine-rich SC35-like splicing factor SCL33 serine/arginine-rich SC35-like splicing factor SCL33 Splicing factor, arginine/serine-rich 2 serine/arginine-rich SC35-like splicing factor SCL28 serine/arginine-rich SC35-like splicing factor SCL28 serine/arginine-rich SC35-like splicing factor SCL28 serine/arginine-rich SC35-like splicing factor SCL28 serine/arginine-rich SC35-like splicing factor SCL33 serine/arginine-rich SC35-like splicing factor SCL28 serine/arginine-rich SC35-like splicing factor SCL33 serine/arginine-rich SC35-like splicing factor SCL33 serine/arginine-rich SC35-like splicing factor SCL28 serine/arginine-rich SC35-like splicing factor SCL30A serine/arginine-rich SC35-like splicing factor SCL33 uncharacterized protein uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 9
ath03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 4
bra03040 Spliceosome 4
bra03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 4
bra03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 5
bna00100 Steroid biosynthesis 2
bna00909 Sesquiterpenoid and triterpenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 7
cit03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 5
cit03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 4
cit04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 7
gma03015 mRNA surveillance pathway 2
gma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 4
gma03082 ATP-dependent chromatin remodeling 4
gma03013 Nucleocytoplasmic transport 3
gma03015 mRNA surveillance pathway 3
gma03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 3
gma04016 MAPK signaling pathway - plant 2
gma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 5
vvi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 5
ppo04141 Protein processing in endoplasmic reticulum 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04141 Protein processing in endoplasmic reticulum 2
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 8
sly03010 Ribosome 3
sly03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03015 mRNA surveillance pathway 2
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 7
nta03015 mRNA surveillance pathway 3
nta03013 Nucleocytoplasmic transport 2
nta04120 Ubiquitin mediated proteolysis 2
nta03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 4
nta03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03030 DNA replication 2
osa03410 Base excision repair 2
osa03420 Nucleotide excision repair 2
osa03440 Homologous recombination 2
osa03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04141 Protein processing in endoplasmic reticulum 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 4
osa04141 Protein processing in endoplasmic reticulum 3
osa03018 RNA degradation 2
osa04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 3
tae03013 Nucleocytoplasmic transport 2
tae03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03082 ATP-dependent chromatin remodeling 3
tae03083 Polycomb repressive complex 3
tae03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 5
hvu00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 4
sbi04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 6
bdi03008 Ribosome biogenesis in eukaryotes 3
bdi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 9
cre03013 Nucleocytoplasmic transport 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107962942 107901967 107897639 820559 841976 103849767 103829790 106452514 106402854 106345754 102613701 102622414 102626112 100779321 100788749 100816913 100263951 100262434 100259677 18097234 18106174 18100597 25483590 11411739 11432730 101259473 101246661 102588722 102599486 102600835 107797093 107773072 107782208 4332903 9268085 4344009 100193374 123085875 123092004 123097399 123448603 123425165 8080788 8063521 8080764 100829528 100833204 100830184 5715518 5719422
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