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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107948474   serine/arginine-rich SC35-like splicing factor SCL33 
 ath-u.5   SCL30A   SC35-like splicing factor 30A 
 ath-u.5   SCL33   SC35-like splicing factor 33 
 gma-u.5   100779321   RNA recognition motif-containing protein 
 gma-u.5   100788749   serine/arginine-rich SC35-like splicing factor SCL28 
 gma-u.5   100795738   RNA recognition motif-containing protein 
 vvi-u.5   100263951   serine/arginine-rich SC35-like splicing factor SCL30A 
 vvi-u.5   100262434   uncharacterized LOC100262434 
 vvi-u.5   100259677   serine/arginine-rich SC35-like splicing factor SCL33 
 ppo-u.5   18097234   serine/arginine-rich SC35-like splicing factor SCL33 
 ppo-u.5   18101709   serine/arginine-rich SC35-like splicing factor SCL28 
 ppo-u.5   18106174   serine/arginine-rich SC35-like splicing factor SCL33 
 mtr-u.5   25483590   serine/arginine-rich SC35-like splicing factor SCL33 
 mtr-u.5   11411739   serine/arginine-rich SC35-like splicing factor SCL28 
 mtr-u.5   11432730   serine/arginine-rich SC35-like splicing factor SCL33 
 sly-u.5   101259473   serine/arginine-rich SC35-like splicing factor SCL33 
 sly-u.5   101246661   putative serine/arginine-rich splicing factor 
 osa-u.5   4332903   serine/arginine-rich SC35-like splicing factor SCL28 
 osa-u.5   9268085   serine/arginine-rich SC35-like splicing factor SCL33 
 osa-u.5   4344009   serine/arginine-rich SC35-like splicing factor SCL33 
 zma-u.5   100285628   uncharacterized LOC100285628 
 zma-u.5   100272550   arginine/serine-rich splicing factor SCL28 transcript II 

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Top 50 coexpressed genes to 107948474 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107948474 (ghi-r.1 coexpression data)

CoexMap"107948474"


ghiLOC107948474 | Entrez gene ID : 107948474    
Species ghi ath gma vvi ppo mtr sly osa zma sbi nta bra cre hvu cit bdi sot tae bna
Paralog 1 2 3 3 3 3 2 3 2 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ghi03040 [list] [network] Spliceosome (739 genes)
GO BP
GO:0000398 [list] [network] mRNA splicing, via spliceosome  (384 genes)  IEA  
GO CC
GO:0016607 [list] [network] nuclear speck  (38 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (13864 genes)  IEA  
GO MF
GO:0003723 [list] [network] RNA binding  (3053 genes)  IEA  
Protein XP_016738521.1 [sequence] [blastp]
XP_016738522.1 [sequence] [blastp]
XP_040967269.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 8,  mito 1  (predict for XP_016738521.1)
nucl 8,  mito 1  (predict for XP_016738522.1)
nucl 8,  mito 1  (predict for XP_040967269.1)
Subcellular
localization
TargetP
mito 6,  chlo 5  (predict for XP_016738521.1)
mito 6,  chlo 5  (predict for XP_016738522.1)
mito 6,  chlo 5  (predict for XP_040967269.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107948474

.
ath-u.5
for
SCL30A

.
ath-u.5
for
SCL33

.
gma-u.5
for
100779321

.
gma-u.5
for
100788749

.
gma-u.5
for
100795738

.
vvi-u.5
for
100263951

.
vvi-u.5
for
100262434

.
vvi-u.5
for
100259677

.
ppo-u.5
for
18097234

.
ppo-u.5
for
18101709

.
ppo-u.5
for
18106174

.
mtr-u.5
for
25483590

.
mtr-u.5
for
11411739

.
mtr-u.5
for
11432730

.
sly-u.5
for
101259473

.
sly-u.5
for
101246661

.
osa-u.5
for
4332903

.
osa-u.5
for
9268085

.
osa-u.5
for
4344009

.
zma-u.5
for
100285628

.
zma-u.5
for
100272550

.


Ortholog ID: 1234
Species ath ath gma gma sly sly osa osa bra vvi vvi ppo ppo mtr mtr tae tae hvu hvu ghi ghi bna bna cre cre sbi sbi sot sot cit cit bdi bdi nta nta
Symbol SCL30A SCL33 LOC100788749 LOC100816913 LOC101246661 LOC101259473 LOC4332903 LOC9268085 LOC103829790 LOC100263951 LOC100262434 LOC18106174 LOC18097234 LOC11432730 LOC11411739 LOC123092004 LOC123085875 LOC123448603 LOC123425165 LOC107901967 LOC107897639 LOC106345754 LOC106452514 CHLRE_01g038650v5 CHLRE_13g586916v5 LOC8063521 LOC8080764 LOC102588722 LOC102599486 LOC102626112 LOC102613701 LOC100829528 LOC100833204 LOC107782208 LOC107797093
Function* SC35-like splicing factor 30A SC35-like splicing factor 33 serine/arginine-rich SC35-like splicing factor SCL28 heterogeneous nuclear ribonucleoprotein D-like putative serine/arginine-rich splicing factor serine/arginine-rich SC35-like splicing factor SCL33 serine/arginine-rich SC35-like splicing factor SCL28 serine/arginine-rich SC35-like splicing factor SCL33 serine/arginine-rich SC35-like splicing factor SCL33 serine/arginine-rich SC35-like splicing factor SCL30A uncharacterized LOC100262434 serine/arginine-rich SC35-like splicing factor SCL33 serine/arginine-rich SC35-like splicing factor SCL33 serine/arginine-rich SC35-like splicing factor SCL33 serine/arginine-rich SC35-like splicing factor SCL28 serine/arginine-rich SC35-like splicing factor SCL28 serine/arginine-rich SC35-like splicing factor SCL28 serine/arginine-rich SC35-like splicing factor SCL28 serine/arginine-rich SC35-like splicing factor SCL33 serine/arginine-rich SC35-like splicing factor SCL30A serine/arginine-rich SC35-like splicing factor SCL28 serine/arginine-rich SC35-like splicing factor SCL33 serine/arginine-rich SC35-like splicing factor SCL33 uncharacterized protein uncharacterized protein serine/arginine-rich SC35-like splicing factor SCL33 serine/arginine-rich SC35-like splicing factor SCL33 serine/arginine-rich SC35-like splicing factor SCL28 serine/arginine-rich SC35-like splicing factor SCL30A serine/arginine-rich SC35-like splicing factor SCL33 serine/arginine-rich SC35-like splicing factor SCL33 serine/arginine-rich SC35-like splicing factor SCL28 serine/arginine-rich SC35-like splicing factor SCL30A serine/arginine-rich SC35-like splicing factor SCL28 serine/arginine-rich SC35-like splicing factor SCL30A
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 9
ath03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 4
gma03082 ATP-dependent chromatin remodeling 4
gma03013 Nucleocytoplasmic transport 3
gma03015 mRNA surveillance pathway 3
gma03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 3
gma04016 MAPK signaling pathway - plant 2
gma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 8
sly03010 Ribosome 3
sly03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03030 DNA replication 2
osa03410 Base excision repair 2
osa03420 Nucleotide excision repair 2
osa03440 Homologous recombination 2
osa03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04141 Protein processing in endoplasmic reticulum 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 4
bra03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 5
vvi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 3
tae03013 Nucleocytoplasmic transport 2
tae03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 5
hvu00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 5
bna00100 Steroid biosynthesis 2
bna00909 Sesquiterpenoid and triterpenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 9
cre03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 4
sbi04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03015 mRNA surveillance pathway 2
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 4
cit04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 7
cit03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 6
bdi03008 Ribosome biogenesis in eukaryotes 3
bdi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 4
nta03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 5
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 820559 841976 100788749 100816913 101246661 101259473 4332903 9268085 103829790 100263951 100262434 18106174 18097234 11432730 11411739 123092004 123085875 123448603 123425165 107901967 107897639 106345754 106452514 5715518 5719422 8063521 8080764 102588722 102599486 102626112 102613701 100829528 100833204 107782208 107797093
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