ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
hvu-r.1	123425165	serine/arginine-rich SC35-like splicing factor SCL33
hvu-r.1	123448603	serine/arginine-rich SC35-like splicing factor SCL28
tae-r.2	123044095	serine/arginine-rich SC35-like splicing factor SCL33
tae-r.2	123085875	serine/arginine-rich SC35-like splicing factor SCL28
tae-r.2	123092004	serine/arginine-rich SC35-like splicing factor SCL28
bdi-r.1	100829528	serine/arginine-rich SC35-like splicing factor SCL28
bdi-r.1	100833204	serine/arginine-rich SC35-like splicing factor SCL30A
bdi-r.1	100830184	serine/arginine-rich SC35-like splicing factor SCL33
osa-u.5	4332903	serine/arginine-rich SC35-like splicing factor SCL28
osa-u.5	9268085	serine/arginine-rich SC35-like splicing factor SCL33
osa-u.5	4344009	serine/arginine-rich SC35-like splicing factor SCL33
zma-u.5	100285628	uncharacterized LOC100285628
zma-u.5	100272550	arginine/serine-rich splicing factor SCL28 transcript II
sbi-r.1	8080788	serine/arginine-rich SC35-like splicing factor SCL28
sbi-r.1	8063521	serine/arginine-rich SC35-like splicing factor SCL33
sbi-r.1	8080764	serine/arginine-rich SC35-like splicing factor SCL33
ath-u.5	SCL30A	SC35-like splicing factor 30A
ath-u.5	SCL33	SC35-like splicing factor 33
gma-u.5	100779321	RNA recognition motif-containing protein
gma-u.5	100788749	serine/arginine-rich SC35-like splicing factor SCL28
gma-u.5	100795738	RNA recognition motif-containing protein
sly-u.5	101259473	serine/arginine-rich SC35-like splicing factor SCL33
sly-u.5	101246661	putative serine/arginine-rich splicing factor
bra-r.6	103871046	serine/arginine-rich SC35-like splicing factor SCL33
bra-r.6	103870289	serine/arginine-rich SC35-like splicing factor SCL30A
vvi-u.5	100263951	serine/arginine-rich SC35-like splicing factor SCL30A
vvi-u.5	100262434	uncharacterized LOC100262434
vvi-u.5	100259677	serine/arginine-rich SC35-like splicing factor SCL33
ppo-u.5	7475944	serine/arginine-rich SC35-like splicing factor SCL28
ppo-u.5	18100597	serine/arginine-rich SC35-like splicing factor SCL33
ppo-u.5	18101709	serine/arginine-rich SC35-like splicing factor SCL28
mtr-u.5	25483590	serine/arginine-rich SC35-like splicing factor SCL33
mtr-u.5	11432730	serine/arginine-rich SC35-like splicing factor SCL33
mtr-u.5	11411739	serine/arginine-rich SC35-like splicing factor SCL28
ghi-r.1	107948474	serine/arginine-rich SC35-like splicing factor SCL33
ghi-r.1	107899205	serine/arginine-rich SC35-like splicing factor SCL33
ghi-r.1	107901967	serine/arginine-rich SC35-like splicing factor SCL30A
bna-r.1	106377441	serine/arginine-rich SC35-like splicing factor SCL30A
bna-r.1	125609469	serine/arginine-rich SC35-like splicing factor SCL33
bna-r.1	125601966	serine/arginine-rich SC35-like splicing factor SCL33
sot-r.1	102588722	serine/arginine-rich SC35-like splicing factor SCL28
sot-r.1	102599486	serine/arginine-rich SC35-like splicing factor SCL30A
sot-r.1	102600835	serine/arginine-rich SC35-like splicing factor SCL30A
cit-r.1	102613701	serine/arginine-rich SC35-like splicing factor SCL33
cit-r.1	102622414	serine/arginine-rich SC35-like splicing factor SCL28
cit-r.1	102626112	serine/arginine-rich SC35-like splicing factor SCL33
nta-r.1	107819002	serine/arginine-rich SC35-like splicing factor SCL28
nta-r.1	107816142	serine/arginine-rich SC35-like splicing factor SCL30A
nta-r.1	107809179	serine/arginine-rich SC35-like splicing factor SCL30A
cre-r.1	CHLRE_01g038650v5	uncharacterized protein
cre-r.1	CHLRE_13g586916v5	uncharacterized protein

Top 50 coexpressed genes to 123425165 (hvu-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 123425165 (hvu-r.1 coexpression data)

CoexMap"123425165"

[Cytoscape]

Annotation

functional annotation

KEGG

hvg03040 [list] [network] Spliceosome (365 genes)

GO BP

GO CC

GO MF

GO:0003723 [list] [network] RNA binding

(1359 genes)

IEA

Protein

XP_044964781.1 [sequence] [blastp]
XP_044964783.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 9, mito 1	(predict for XP_044964781.1)
nucl 9, mito 1	(predict for XP_044964783.1)

Subcellular
localization
TargetP

chlo 6, mito 5	(predict for XP_044964781.1)
chlo 6, mito 5	(predict for XP_044964783.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	hvu-r.1 for 123425165	hvu-r.1 for 123448603	tae-r.2 for 123044095	tae-r.2 for 123085875	tae-r.2 for 123092004	bdi-r.1 for 100829528	bdi-r.1 for 100833204	bdi-r.1 for 100830184	osa-u.5 for 4332903	osa-u.5 for 9268085	osa-u.5 for 4344009	zma-u.5 for 100285628	zma-u.5 for 100272550	sbi-r.1 for 8080788	sbi-r.1 for 8063521	sbi-r.1 for 8080764	ath-u.5 for SCL30A	ath-u.5 for SCL33	gma-u.5 for 100779321	gma-u.5 for 100788749	gma-u.5 for 100795738	sly-u.5 for 101259473	sly-u.5 for 101246661	bra-r.6 for 103871046	bra-r.6 for 103870289	vvi-u.5 for 100263951	vvi-u.5 for 100262434	vvi-u.5 for 100259677	ppo-u.5 for 7475944	ppo-u.5 for 18100597	ppo-u.5 for 18101709	mtr-u.5 for 25483590	mtr-u.5 for 11432730	mtr-u.5 for 11411739	ghi-r.1 for 107948474	ghi-r.1 for 107899205	ghi-r.1 for 107901967	bna-r.1 for 106377441	bna-r.1 for 125609469	bna-r.1 for 125601966	sot-r.1 for 102588722	sot-r.1 for 102599486	sot-r.1 for 102600835	cit-r.1 for 102613701	cit-r.1 for 102622414	cit-r.1 for 102626112	nta-r.1 for 107819002	nta-r.1 for 107816142	nta-r.1 for 107809179	cre-r.1 for CHLRE_01g038650v5	cre-r.1 for CHLRE_13g586916v5

Ortholog

Ortholog ID: 1234

Species

hvu

tae

bdi

osa

zma

sbi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

SCL30A

SCL33

Function^*