ATTED-II : GeneCoexpression result

Species	Gene	Description
bdi-r.1	100833583	RNA-binding protein 24
osa-u.5	4330510	RNA-binding protein 24
osa-u.5	4341556	uncharacterized LOC4341556
zma-u.5	103638790	RNA-binding protein 38
zma-u.5	100501435	uncharacterized LOC100501435
zma-u.5	100284337	uncharacterized LOC100284337
ath-u.5	AT1G20880	RNA-binding (RRM/RBD/RNP motifs) family protein
ath-u.5	AT1G76460	RNA-binding (RRM/RBD/RNP motifs) family protein
gma-u.5	100782606	RNA-binding protein 38
gma-u.5	100779244	RNA-binding protein 38
sly-u.5	101268392	uncharacterized LOC101268392
vvi-u.5	100258188	uncharacterized LOC100258188
ppo-u.5	7485663	uncharacterized LOC7485663
ppo-u.5	7471743	uncharacterized LOC7471743
mtr-u.5	11412629	RNA-binding protein 38

Annotation

functional annotation

KEGG

GO BP

GO CC

GO MF

GO:0003723 [list] [network] RNA binding

(1239 genes)

IEA

Protein

XP_010235880.1 [sequence] [blastp]
XP_010235881.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 9, chlo 1, E.R. 1	(predict for XP_010235880.1)
nucl 9, chlo 1, pero 1	(predict for XP_010235881.1)

Subcellular
localization
TargetP

chlo 8	(predict for XP_010235880.1)
chlo 8	(predict for XP_010235881.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bdi-r.1 for 100833583	osa-u.5 for 4330510	osa-u.5 for 4341556	zma-u.5 for 103638790	zma-u.5 for 100501435	zma-u.5 for 100284337	ath-u.5 for AT1G20880	ath-u.5 for AT1G76460	gma-u.5 for 100782606	gma-u.5 for 100779244	sly-u.5 for 101268392	vvi-u.5 for 100258188	ppo-u.5 for 7485663	ppo-u.5 for 7471743	mtr-u.5 for 11412629

Ortholog

Ortholog ID: 4001

Species

bdi

tae

hvu

osa

zma

sbi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

Symbol

Function^*

RNA-binding protein 24

RNA-binding protein 24-A

RNA-binding protein 38

RNA-binding protein 24-B

RNA-binding protein 24-like

RNA-binding protein 24

uncharacterized LOC4341556

RNA-binding protein 38

uncharacterized LOC100279322

RNA-binding protein 24-A

RNA-binding protein 24

RNA-binding (RRM/RBD/RNP motifs) family protein

RNA-binding protein 38

uncharacterized LOC101268392

RNA-binding protein 24-B

RNA-binding protein 24

uncharacterized LOC100258188

uncharacterized LOC7471743

uncharacterized LOC7485663

RNA-binding protein 38

RNA-binding protein 24-B

RNA-binding protein 38

RNA-binding protein 24

RNA-binding protein 24-B

RNA-binding protein 38

uncharacterized LOC102618742

uncharacterized LOC102608795

uncharacterized LOC107812947

Coexmap

Please wait a moment.

Coexpression

Please wait a moment.

KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00904	Diterpenoid biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03015	mRNA surveillance pathway	2
tae00564	Glycerophospholipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04141	Protein processing in endoplasmic reticulum	2
hvu04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03082	ATP-dependent chromatin remodeling	3
gma00513	Various types of N-glycan biosynthesis	2
gma04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03015	mRNA surveillance pathway	2
bra04136	Autophagy - other	2
bra04382	Cornified envelope formation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03018	RNA degradation	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03018	RNA degradation	5
ghi04136	Autophagy - other	2
ghi00562	Inositol phosphate metabolism	2
ghi04070	Phosphatidylinositol signaling system	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03015	mRNA surveillance pathway	3
cit04382	Cornified envelope formation	2
cit03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00650	Butanoate metabolism	2
nta03015	mRNA surveillance pathway	2
nta04141	Protein processing in endoplasmic reticulum	2

Expression

Expression pattern

Entrez Gene ID^*

100833583

100823039

123164723

123145274

123401010

4330510

4341556

103638790

100279322

8083468

8073831

838681

843979

100782606

100779244

101268392

103832109

103872876

100258188

7471743

7485663

11412629

107917869

107922223

106347291

111207197

102584346

102618742

102608795

107812947

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 100833583 (bdi-r.1 coexpression data)

Top 50 enrichment test to 100833583 (bdi-r.1 coexpression data)


Species	bdi	osa	zma	ath	gma	sly	vvi	ppo	mtr	hvu	bra	cit	bna	sbi	ghi	sot	nta	cre	tae
Paralog	1	2	3	2	2	1	1	2	1	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100833583 (bdi-r.1 coexpression data)

Top 50 enrichment test to 100833583 (bdi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**