ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
sly-u.5	101245110	coatomer subunit epsilon-1
sly-r.6	101245110	coatomer subunit epsilon-1
sly-u.5	101266095	coatomer subunit epsilon-1
sot-r.1	102581548	coatomer subunit epsilon-1
sot-r.1	102582432	coatomer subunit epsilon-1-like
nta-r.1	107803985	coatomer subunit epsilon-1
nta-r.1	107785121	coatomer subunit epsilon-1
ath-u.5	AT2G34840	Coatomer epsilon subunit
ath-u.5	AT1G30630	Coatomer epsilon subunit
gma-u.5	COPE1	epsilon1-COP
gma-u.5	COPE2	epsilon2-COP
bra-r.6	103857552	coatomer subunit epsilon-2
bra-r.6	103840372	coatomer subunit epsilon-1
bra-r.6	103865360	coatomer subunit epsilon-2
vvi-u.5	100264563	coatomer subunit epsilon-like
ppo-u.5	7485150	coatomer subunit epsilon-1
mtr-u.5	25486358	coatomer subunit epsilon-2
ghi-r.1	107941169	coatomer subunit epsilon-1
ghi-r.1	107910648	coatomer subunit epsilon-1
ghi-r.1	107906332	coatomer subunit epsilon-1
bna-r.1	106448868	coatomer subunit epsilon-2
bna-r.1	106447212	coatomer subunit epsilon-2
bna-r.1	106437840	coatomer subunit epsilon-2-like
cit-r.1	102629999	coatomer subunit epsilon-1
osa-u.5	4336967	coatomer subunit epsilon-1-like
zma-u.5	100194321	Coatomer subunit epsilon-2
zma-u.5	541811	coatomer protein 2
tae-r.2	123046466	coatomer subunit epsilon-1
tae-r.2	123054315	coatomer subunit epsilon-1
tae-r.2	123190203	coatomer subunit epsilon-1
hvu-r.1	123427630	coatomer subunit epsilon-1
sbi-r.1	8072329	coatomer subunit epsilon-1
bdi-r.1	100834675	coatomer subunit epsilon-1
cre-r.1	CHLRE_13g592450v5	uncharacterized protein

Top 50 coexpressed genes to 101245110 (sly-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 101245110 (sly-u.5 coexpression data)

CoexMap"101245110"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0006891 [list] [network] intra-Golgi vesicle-mediated transport	(30 genes)	IEA
GO:0006890 [list] [network] retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum	(34 genes)	IEA
GO:0006888 [list] [network] endoplasmic reticulum to Golgi vesicle-mediated transport	(98 genes)	IEA

GO CC

GO:0030126 [list] [network] COPI vesicle coat

(19 genes)

IEA

GO MF

GO:0005198 [list] [network] structural molecule activity	(479 genes)	IEA
GO:0005515 [list] [network] protein binding	(3982 genes)	IEA

Protein

XP_004231575.2 [sequence] [blastp]
XP_010315647.2 [sequence] [blastp]

Subcellular
localization
wolf

mito 3, nucl 2, cyto 2, chlo_mito 2, nucl_plas 2	(predict for XP_004231575.2)
mito 4, cyto 2, nucl 1, cyto_mito 1, nucl_plas 1	(predict for XP_010315647.2)

Subcellular
localization
TargetP

other 7	(predict for XP_004231575.2)
other 7	(predict for XP_010315647.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	sly-u.5 for 101245110	sly-r.6 for 101245110	sly-u.5 for 101266095	sot-r.1 for 102581548	sot-r.1 for 102582432	nta-r.1 for 107803985	nta-r.1 for 107785121	ath-u.5 for AT2G34840	ath-u.5 for AT1G30630	gma-u.5 for COPE1	gma-u.5 for COPE2	bra-r.6 for 103857552	bra-r.6 for 103840372	bra-r.6 for 103865360	vvi-u.5 for 100264563	ppo-u.5 for 7485150	mtr-u.5 for 25486358	ghi-r.1 for 107941169	ghi-r.1 for 107910648	ghi-r.1 for 107906332	bna-r.1 for 106448868	bna-r.1 for 106447212	bna-r.1 for 106437840	cit-r.1 for 102629999	osa-u.5 for 4336967	zma-u.5 for 100194321	zma-u.5 for 541811	tae-r.2 for 123046466	tae-r.2 for 123054315	tae-r.2 for 123190203	hvu-r.1 for 123427630	sbi-r.1 for 8072329	bdi-r.1 for 100834675	cre-r.1 for CHLRE_13g592450v5

Ortholog

Ortholog ID: 4881

Species

sly

sot

nta

ath

gma

bra

vvi

ppo

mtr

ghi

bna

cit

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

COPE1

COPE2

Function^*

coatomer subunit epsilon-1

coatomer subunit epsilon-1-like

coatomer subunit epsilon-1

Coatomer epsilon subunit

epsilon1-COP

epsilon2-COP

coatomer subunit epsilon-2

coatomer subunit epsilon-1

coatomer subunit epsilon-2

coatomer subunit epsilon-like

coatomer subunit epsilon-1

coatomer subunit epsilon-2

coatomer subunit epsilon-1

coatomer subunit epsilon-2

coatomer subunit epsilon-1

coatomer subunit epsilon-1-like

Coatomer subunit epsilon-2

coatomer protein 2

coatomer subunit epsilon-1

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00190	Oxidative phosphorylation	3
sly04145	Phagosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03010	Ribosome	4
sly04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04141	Protein processing in endoplasmic reticulum	5
sot03060	Protein export	2
sot04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04145	Phagosome	5
sot04517	IgSF CAM signaling	5
sot04814	Motor proteins	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04144	Endocytosis	4
nta00190	Oxidative phosphorylation	3
nta04145	Phagosome	3
nta04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04144	Endocytosis	4
nta00190	Oxidative phosphorylation	3
nta04145	Phagosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04130	SNARE interactions in vesicular transport	2
ath04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04144	Endocytosis	4
ath04130	SNARE interactions in vesicular transport	2
ath04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00330	Arginine and proline metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00190	Oxidative phosphorylation	2
bra04142	Lysosome	2
bra04145	Phagosome	2
bra03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03050	Proteasome	5
bra03015	mRNA surveillance pathway	2
bra04382	Cornified envelope formation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04144	Endocytosis	2
bra00010	Glycolysis / Gluconeogenesis	2
bra00230	Purine metabolism	2
bra01232	Nucleotide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04141	Protein processing in endoplasmic reticulum	3
vvi00510	N-Glycan biosynthesis	2
vvi00513	Various types of N-glycan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo01240	Biosynthesis of cofactors	4
ppo00040	Pentose and glucuronate interconversions	2
ppo00053	Ascorbate and aldarate metabolism	2
ppo00520	Amino sugar and nucleotide sugar metabolism	2
ppo00541	Biosynthesis of various nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04141	Protein processing in endoplasmic reticulum	2
mtr00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04144	Endocytosis	3
cit04145	Phagosome	2
cit00541	Biosynthesis of various nucleotide sugars	2
cit01250	Biosynthesis of nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03050	Proteasome	3
osa01200	Carbon metabolism	3
osa00020	Citrate cycle (TCA cycle)	2
osa00640	Propanoate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma01240	Biosynthesis of cofactors	5
zma00061	Fatty acid biosynthesis	4
zma01212	Fatty acid metabolism	4
zma00780	Biotin metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04142	Lysosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04142	Lysosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04142	Lysosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04141	Protein processing in endoplasmic reticulum	3
hvu00510	N-Glycan biosynthesis	2
hvu03015	mRNA surveillance pathway	2
hvu04382	Cornified envelope formation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03015	mRNA surveillance pathway	3
sbi04120	Ubiquitin mediated proteolysis	2
sbi03050	Proteasome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04144	Endocytosis	4
bdi04142	Lysosome	2
bdi05100	Bacterial invasion of epithelial cells	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre00190	Oxidative phosphorylation	5
cre04145	Phagosome	5
cre00514	Other types of O-glycan biosynthesis	4
cre00520	Amino sugar and nucleotide sugar metabolism	3
cre01250	Biosynthesis of nucleotide sugars	3

Expression

Expression pattern

Entrez Gene ID^*

101245110

101266095

102581548

102582432

107803985

107785121

818049

839943

547468

547992

103857552

103840372

103865360

100264563

7485150

25486358

107941169

107906332

107950986

106447212

106402825

106367256

102629999

4336967

100194321

541811

123046466

123054315

123190203

123427630

8072329

100834675

5718666

The preparation time of this page was 0.1 [sec].


Species	sly	sot	nta	ath	gma	bra	vvi	ppo	mtr	ghi	bna	cit	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	3	2	2	2	2	3	1	1	1	3	3	1	1	2	3	1	1	1	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 101245110 (sly-u.5 coexpression data)

Top 50 enrichment test to 101245110 (sly-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**