ATTED-II : GeneCoexpression result

Species	Gene	Description
zma-u.5	541811	coatomer protein 2
zma-r.6	541811	coatomer protein 2
zma-m.5	541811	coatomer protein 2
zma-u.5	100194321	Coatomer subunit epsilon-2
osa-u.5	4336967	coatomer subunit epsilon-1-like
ath-u.5	AT2G34840	Coatomer epsilon subunit
ath-u.5	AT1G30630	Coatomer epsilon subunit
gma-u.5	COPE1	epsilon1-COP
gma-u.5	COPE2	epsilon2-COP
sly-u.5	101266095	coatomer subunit epsilon-1
sly-u.5	101245110	coatomer subunit epsilon-1
vvi-u.5	100264563	coatomer subunit epsilon-like
ppo-u.5	7485150	coatomer subunit epsilon-1
mtr-u.5	25486358	coatomer subunit epsilon-2

functional annotation

KEGG

GO BP

GO:0006890 [list] [network] retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum	(46 genes)	IEA
GO:0006891 [list] [network] intra-Golgi vesicle-mediated transport	(61 genes)	IEA
GO:0006888 [list] [network] endoplasmic reticulum to Golgi vesicle-mediated transport	(111 genes)	IEA

GO CC

GO:0030126 [list] [network] COPI vesicle coat

(34 genes)

IEA

GO MF

GO:0005198 [list] [network] structural molecule activity	(681 genes)	IEA
GO:0005515 [list] [network] protein binding	(4389 genes)	IEA

Protein

NP_001104962.1 [sequence] [blastp]
NP_001393842.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 4, chlo 2, cyto_E.R. 2, cyto_plas 2	(predict for NP_001104962.1)
cyto 4, chlo 4, nucl 1, mito 1, pero 1	(predict for NP_001393842.1)

Subcellular
localization
TargetP

scret 7	(predict for NP_001104962.1)
scret 7	(predict for NP_001393842.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	zma-u.5 for 541811	zma-r.6 for 541811	zma-m.5 for 541811	zma-u.5 for 100194321	osa-u.5 for 4336967	ath-u.5 for AT2G34840	ath-u.5 for AT1G30630	gma-u.5 for COPE1	gma-u.5 for COPE2	sly-u.5 for 101266095	sly-u.5 for 101245110	vvi-u.5 for 100264563	ppo-u.5 for 7485150	mtr-u.5 for 25486358

Ortholog ID: 4881

Species

zma

sbi

osa

tae

hvu

bdi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

COPE1

COPE2

Function^*

Coatomer subunit epsilon-2

coatomer protein 2

coatomer subunit epsilon-1

coatomer subunit epsilon-1-like

coatomer subunit epsilon-1

Coatomer epsilon subunit

epsilon1-COP

epsilon2-COP

coatomer subunit epsilon-1

coatomer subunit epsilon-2

coatomer subunit epsilon-1

coatomer subunit epsilon-like

coatomer subunit epsilon-1

coatomer subunit epsilon-2

coatomer subunit epsilon-1

coatomer subunit epsilon-2

coatomer subunit epsilon-1

coatomer subunit epsilon-1-like

coatomer subunit epsilon-1

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma01240	Biosynthesis of cofactors	5
zma00061	Fatty acid biosynthesis	4
zma01212	Fatty acid metabolism	4
zma00780	Biotin metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03015	mRNA surveillance pathway	3
sbi04120	Ubiquitin mediated proteolysis	2
sbi03050	Proteasome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03050	Proteasome	3
osa01200	Carbon metabolism	3
osa00020	Citrate cycle (TCA cycle)	2
osa00640	Propanoate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04142	Lysosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04142	Lysosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04141	Protein processing in endoplasmic reticulum	3
hvu00510	N-Glycan biosynthesis	2
hvu03015	mRNA surveillance pathway	2
hvu04382	Cornified envelope formation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04144	Endocytosis	4
bdi04142	Lysosome	2
bdi05100	Bacterial invasion of epithelial cells	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04144	Endocytosis	4
ath04130	SNARE interactions in vesicular transport	2
ath04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04130	SNARE interactions in vesicular transport	2
ath04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00330	Arginine and proline metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03010	Ribosome	4
sly04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00190	Oxidative phosphorylation	3
sly04145	Phagosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04144	Endocytosis	2
bra00010	Glycolysis / Gluconeogenesis	2
bra00230	Purine metabolism	2
bra01232	Nucleotide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03050	Proteasome	5
bra03015	mRNA surveillance pathway	2
bra04382	Cornified envelope formation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04141	Protein processing in endoplasmic reticulum	3
vvi00510	N-Glycan biosynthesis	2
vvi00513	Various types of N-glycan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo01240	Biosynthesis of cofactors	4
ppo00040	Pentose and glucuronate interconversions	2
ppo00053	Ascorbate and aldarate metabolism	2
ppo00520	Amino sugar and nucleotide sugar metabolism	2
ppo00541	Biosynthesis of various nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04141	Protein processing in endoplasmic reticulum	2
mtr00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04141	Protein processing in endoplasmic reticulum	5
sot03060	Protein export	2
sot04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04145	Phagosome	5
sot04517	IgSF CAM signaling	5
sot04814	Motor proteins	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04144	Endocytosis	3
cit04145	Phagosome	2
cit00541	Biosynthesis of various nucleotide sugars	2
cit01250	Biosynthesis of nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04144	Endocytosis	4
nta00190	Oxidative phosphorylation	3
nta04145	Phagosome	3
nta04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04144	Endocytosis	4
nta00190	Oxidative phosphorylation	3
nta04145	Phagosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre00190	Oxidative phosphorylation	5
cre04145	Phagosome	5
cre00514	Other types of O-glycan biosynthesis	4
cre00520	Amino sugar and nucleotide sugar metabolism	3
cre01250	Biosynthesis of nucleotide sugars	3

Expression

Expression pattern

Entrez Gene ID^*

100194321

541811

8072329

4336967

123046466

123190203

123427630

100834675

839943

818049

547468

547992

101266095

101245110

103865360

103840372

100264563

7485150

25486358

107906332

107941169

106402825

106367256

102581548

102582432

102629999

107803985

107785121

5718666

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 541811 (zma-u.5 coexpression data)

Top 50 enrichment test to 541811 (zma-u.5 coexpression data)


Species	zma	osa	ath	gma	sly	vvi	ppo	mtr	bdi	hvu	bra	cit	bna	sbi	ghi	sot	nta	cre	tae
Paralog	4	1	2	2	2	1	1	1	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 541811 (zma-u.5 coexpression data)

Top 50 enrichment test to 541811 (zma-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**