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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   101246778   organelle RRM domain-containing protein 1, chloroplastic 
 sly-r.6   101246778   organelle RRM domain-containing protein 1, chloroplastic 
 ath-u.5   AT3G20930   RNA-binding (RRM/RBD/RNP motifs) family protein 
 gma-u.5   100791652   organelle RRM domain-containing protein 1, chloroplastic 
 vvi-u.5   100265361   organelle RRM domain-containing protein 1, chloroplastic 
 ppo-u.5   112328840   organelle RRM domain-containing protein 1, chloroplastic 
 mtr-u.5   11405373   organelle RRM domain-containing protein 1, chloroplastic 
 osa-u.5   4330618   organelle RRM domain-containing protein 1, chloroplastic-like 

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Top 50 coexpressed genes to 101246778 (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 101246778 (sly-u.5 coexpression data)

CoexMap"101246778"


slyLOC101246778 | Entrez gene ID : 101246778      
Species sly ath gma vvi ppo mtr osa sbi nta bra cre hvu cit bdi sot zma tae bna ghi
Paralog 2 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0016554 [list] [network] cytidine to uridine editing  (10 genes)  IEA  
GO:0080156 [list] [network] mitochondrial mRNA modification  (11 genes)  IEA  
GO CC
GO:0005739 [list] [network] mitochondrion  (608 genes)  IEA  
GO MF
GO:0003723 [list] [network] RNA binding  (1208 genes)  IEA  
Protein XP_004249980.1 [sequence] [blastp]
XP_019066778.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  nucl 3,  cyto 1,  E.R. 1,  cysk 1,  golg 1,  cyto_E.R. 1  (predict for XP_004249980.1)
chlo 4,  nucl 4,  extr 1,  pero 1,  cysk 1,  golg 1  (predict for XP_019066778.1)
Subcellular
localization
TargetP
chlo 9  (predict for XP_004249980.1)
other 7  (predict for XP_019066778.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
101246778

.
sly-r.6
for
101246778

.
ath-u.5
for
AT3G20930

.
gma-u.5
for
100791652

.
vvi-u.5
for
100265361

.
ppo-u.5
for
112328840

.
mtr-u.5
for
11405373

.
osa-u.5
for
4330618

.


Ortholog ID: 10788
Species ath gma sly osa bra vvi ppo mtr tae tae hvu ghi ghi sbi sot cit bdi nta
Symbol AT3G20930 LOC100791652 LOC101246778 LOC4330618 LOC103869215 LOC100265361 LOC112328840 LOC11405373 LOC123138137 LOC123145392 LOC123403191 LOC107915694 LOC107896289 LOC110435107 LOC102599113 LOC102620843 LOC100843274 LOC107832776
Function* RNA-binding (RRM/RBD/RNP motifs) family protein organelle RRM domain-containing protein 1, chloroplastic organelle RRM domain-containing protein 1, chloroplastic organelle RRM domain-containing protein 1, chloroplastic-like organelle RRM domain-containing protein 1, chloroplastic organelle RRM domain-containing protein 1, chloroplastic organelle RRM domain-containing protein 1, chloroplastic organelle RRM domain-containing protein 1, chloroplastic organelle RRM domain-containing protein 1, chloroplastic organelle RRM domain-containing protein 1, chloroplastic organelle RRM domain-containing protein 1, chloroplastic organelle RRM domain-containing protein 1, chloroplastic organelle RRM domain-containing protein 1, chloroplastic organelle RRM domain-containing protein 1, chloroplastic uncharacterized LOC102599113 organelle RRM domain-containing protein 1, chloroplastic organelle RRM domain-containing protein 1, chloroplastic organelle RRM domain-containing protein 1, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma01200 Carbon metabolism 2
gma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01240 Biosynthesis of cofactors 2
sly03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00860 Porphyrin metabolism 4
tae01240 Biosynthesis of cofactors 4
tae03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00730 Thiamine metabolism 2
hvu01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00240 Pyrimidine metabolism 2
ghi01232 Nucleotide metabolism 2
ghi00450 Selenocompound metabolism 2
ghi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00240 Pyrimidine metabolism 2
ghi01232 Nucleotide metabolism 2
ghi00450 Selenocompound metabolism 2
ghi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot01232 Nucleotide metabolism 3
sot00230 Purine metabolism 2
sot01240 Biosynthesis of cofactors 2
sot03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00230 Purine metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 821642 100791652 101246778 4330618 103869215 100265361 112328840 11405373 123138137 123145392 123403191 107915694 107896289 110435107 102599113 102620843 100843274 107832776
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