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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   112328840   organelle RRM domain-containing protein 1, chloroplastic 
 ppo-r.4   112328840   organelle RRM domain-containing protein 1, chloroplastic 
 gma-u.5   100791652   organelle RRM domain-containing protein 1, chloroplastic 
 mtr-u.5   11405373   organelle RRM domain-containing protein 1, chloroplastic 
 ath-u.5   AT3G20930   RNA-binding (RRM/RBD/RNP motifs) family protein 
 bra-r.6   103869215   organelle RRM domain-containing protein 1, chloroplastic 
 vvi-u.5   100265361   organelle RRM domain-containing protein 1, chloroplastic 
 ghi-r.1   107915694   organelle RRM domain-containing protein 1, chloroplastic 
 ghi-r.1   107896289   organelle RRM domain-containing protein 1, chloroplastic 
 bna-r.1   106401489   organelle RRM domain-containing protein 1, chloroplastic 
 cit-r.1   102620843   organelle RRM domain-containing protein 1, chloroplastic 
 sly-u.5   101246778   organelle RRM domain-containing protein 1, chloroplastic 
 sot-r.1   102599113   uncharacterized LOC102599113 
 nta-r.1   107832776   organelle RRM domain-containing protein 1, chloroplastic 
 osa-u.5   4330618   organelle RRM domain-containing protein 1, chloroplastic-like 
 tae-r.2   123128281   organelle RRM domain-containing protein 1, chloroplastic 
 tae-r.2   123138137   organelle RRM domain-containing protein 1, chloroplastic 
 tae-r.2   123145392   organelle RRM domain-containing protein 1, chloroplastic 
 hvu-r.1   123403191   organelle RRM domain-containing protein 1, chloroplastic 
 sbi-r.1   110435107   organelle RRM domain-containing protein 1, chloroplastic 
 bdi-r.1   100843274   organelle RRM domain-containing protein 1, chloroplastic 

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Top 50 coexpressed genes to 112328840 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 112328840 (ppo-u.5 coexpression data)

CoexMap"112328840"


ppoLOC112328840 | Entrez gene ID : 112328840    
Species ppo gma mtr ath bra vvi ghi bna cit sly sot nta osa tae hvu sbi bdi zma cre
Paralog 2 1 1 1 1 1 2 1 1 1 1 1 1 3 1 1 1 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0016554 [list] [network] cytidine to uridine editing  (11 genes)  IEA  
GO:0080156 [list] [network] mitochondrial mRNA modification  (11 genes)  IEA  
GO CC
GO:0005739 [list] [network] mitochondrion  (675 genes)  IEA  
GO MF
GO:0003723 [list] [network] RNA binding  (1480 genes)  IEA  
Protein XP_024465621.1 [sequence] [blastp]
XP_024465622.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 3,  mito 3,  cyto_nucl 3,  cyto 1,  mito_plas 1  (predict for XP_024465621.1)
nucl 3,  cyto_nucl 3,  chlo 2,  mito 2,  chlo_mito 2  (predict for XP_024465622.1)
Subcellular
localization
TargetP
chlo 8  (predict for XP_024465621.1)
chlo 8  (predict for XP_024465622.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
112328840
ppo-r.4
for
112328840
gma-u.5
for
100791652
mtr-u.5
for
11405373
ath-u.5
for
AT3G20930
bra-r.6
for
103869215
vvi-u.5
for
100265361
ghi-r.1
for
107915694
ghi-r.1
for
107896289
bna-r.1
for
106401489
cit-r.1
for
102620843
sly-u.5
for
101246778
sot-r.1
for
102599113
nta-r.1
for
107832776
osa-u.5
for
4330618
tae-r.2
for
123128281
tae-r.2
for
123138137
tae-r.2
for
123145392
hvu-r.1
for
123403191
sbi-r.1
for
110435107
bdi-r.1
for
100843274


Ortholog ID: 10788
Species ppo gma mtr ath bra vvi ghi ghi bna cit sly sot nta osa tae tae tae hvu sbi bdi
Symbol LOC112328840 LOC100791652 LOC11405373 AT3G20930 LOC103869215 LOC100265361 LOC107915694 LOC107896289 LOC106401489 LOC102620843 LOC101246778 LOC102599113 LOC107832776 LOC4330618 LOC123128281 LOC123138137 LOC123145392 LOC123403191 LOC110435107 LOC100843274
Function* organelle RRM domain-containing protein 1, chloroplastic organelle RRM domain-containing protein 1, chloroplastic organelle RRM domain-containing protein 1, chloroplastic RNA-binding (RRM/RBD/RNP motifs) family protein organelle RRM domain-containing protein 1, chloroplastic organelle RRM domain-containing protein 1, chloroplastic organelle RRM domain-containing protein 1, chloroplastic organelle RRM domain-containing protein 1, chloroplastic organelle RRM domain-containing protein 1, chloroplastic organelle RRM domain-containing protein 1, chloroplastic organelle RRM domain-containing protein 1, chloroplastic uncharacterized LOC102599113 organelle RRM domain-containing protein 1, chloroplastic organelle RRM domain-containing protein 1, chloroplastic-like organelle RRM domain-containing protein 1, chloroplastic organelle RRM domain-containing protein 1, chloroplastic organelle RRM domain-containing protein 1, chloroplastic organelle RRM domain-containing protein 1, chloroplastic organelle RRM domain-containing protein 1, chloroplastic organelle RRM domain-containing protein 1, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma01200 Carbon metabolism 2
gma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00240 Pyrimidine metabolism 2
ghi01232 Nucleotide metabolism 2
ghi00450 Selenocompound metabolism 2
ghi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00240 Pyrimidine metabolism 2
ghi01232 Nucleotide metabolism 2
ghi00450 Selenocompound metabolism 2
ghi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01240 Biosynthesis of cofactors 2
sly03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot01232 Nucleotide metabolism 3
sot00230 Purine metabolism 2
sot01240 Biosynthesis of cofactors 2
sot03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00564 Glycerophospholipid metabolism 4
tae00565 Ether lipid metabolism 3
tae04144 Endocytosis 3
tae00562 Inositol phosphate metabolism 2
tae04070 Phosphatidylinositol signaling system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00860 Porphyrin metabolism 4
tae01240 Biosynthesis of cofactors 4
tae03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00730 Thiamine metabolism 2
hvu01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi01200 Carbon metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 112328840 100791652 11405373 821642 103869215 100265361 107915694 107896289 106401489 102620843 101246778 102599113 107832776 4330618 123128281 123138137 123145392 123403191 110435107 100843274
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