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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   101249085   DNA repair protein RAD16-like 
 sly-r.6   101249085   DNA repair protein RAD16-like 
 sly-u.5   101254345   DNA repair protein RAD16-like 
 ath-u.5   AT1G05120   Helicase protein with RING/U-box domain-containing protein 
 ath-u.5   AT1G02670   P-loop containing nucleoside triphosphate hydrolases superfamily protein 
 gma-u.5   100798333   DNA repair protein RAD16 
 gma-u.5   100786366   DNA repair protein RAD16 
 vvi-u.5   100267049   DNA repair protein RAD16 
 ppo-u.5   7463406   DNA repair protein RAD16 
 mtr-u.5   11443944   DNA repair protein RAD16 
 osa-u.5   4343361   DNA repair protein RAD16 
 zma-u.5   103633219   DNA repair protein RAD16 

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Top 50 coexpressed genes to 101249085 (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 101249085 (sly-u.5 coexpression data)

CoexMap"101249085"


slyLOC101249085 | Entrez gene ID : 101249085      
Species sly ath gma vvi ppo mtr osa zma cre ghi cit hvu bdi sot bra sbi tae nta bna
Paralog 3 2 2 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006289 [list] [network] nucleotide-excision repair  (40 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (2947 genes)  IEA  
GO MF
GO:0140658 [list] [network] ATP-dependent chromatin remodeler activity  (54 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (1916 genes)  IEA  
Protein XP_004240150.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  golg 1,  golg_plas 1,  mito 1,  plas 1,  chlo_mito 1  (predict for XP_004240150.2)
Subcellular
localization
TargetP
mito 7  (predict for XP_004240150.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
101249085

.
sly-r.6
for
101249085

.
sly-u.5
for
101254345

.
ath-u.5
for
AT1G05120

.
ath-u.5
for
AT1G02670

.
gma-u.5
for
100798333

.
gma-u.5
for
100786366

.
vvi-u.5
for
100267049

.
ppo-u.5
for
7463406

.
mtr-u.5
for
11443944

.
osa-u.5
for
4343361

.
zma-u.5
for
103633219

.


Ortholog ID: 3640
Species ath ath gma gma sly osa zma bra bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol AT1G02670 AT1G05120 LOC100798333 LOC100786366 LOC101251601 LOC4343361 LOC103633219 LOC103844170 LOC103844175 LOC100267049 LOC7463406 LOC11443944 LOC123052565 LOC123044702 LOC123425921 LOC107887153 LOC121214653 LOC111213864 LOC106400558 CHLRE_11g479300v5 LOC8077499 LOC102586115 LOC102630106 LOC100826734 LOC142173220 LOC142173222
Function* P-loop containing nucleoside triphosphate hydrolases superfamily protein Helicase protein with RING/U-box domain-containing protein DNA repair protein RAD16 DNA repair protein RAD16 ATP-dependent helicase rhp16-like DNA repair protein RAD16 DNA repair protein RAD16 DNA repair protein RAD16 ATP-dependent helicase rhp16 DNA repair protein RAD16 DNA repair protein RAD16 DNA repair protein RAD16 DNA repair protein RAD16 DNA repair protein RAD16 DNA repair protein RAD16 DNA repair protein RAD16 DNA repair protein RAD16 ATP-dependent helicase rhp16-like ATP-dependent helicase rhp16 uncharacterized protein DNA repair protein RAD16 ATP-dependent helicase rhp16-like DNA repair protein RAD16 DNA repair protein RAD16 ATP-dependent helicase rhp16-like ATP-dependent helicase rhp16-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03460 Fanconi anemia pathway 2
ath03030 DNA replication 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03083 Polycomb repressive complex 4
ath03015 mRNA surveillance pathway 3
ath03013 Nucleocytoplasmic transport 2
ath03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03083 Polycomb repressive complex 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04120 Ubiquitin mediated proteolysis 3
gma03040 Spliceosome 2
gma03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04814 Motor proteins 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03030 DNA replication 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 5
bra03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 2
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04120 Ubiquitin mediated proteolysis 2
ppo04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00561 Glycerolipid metabolism 2
ghi00564 Glycerophospholipid metabolism 2
ghi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00561 Glycerolipid metabolism 2
ghi00564 Glycerophospholipid metabolism 2
ghi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03083 Polycomb repressive complex 2
bna00710 Carbon fixation by Calvin cycle 2
bna01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 5
sbi03013 Nucleocytoplasmic transport 3
sbi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04120 Ubiquitin mediated proteolysis 2
sot04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04814 Motor proteins 2
cit00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 839532 839319 100798333 100786366 101251601 4343361 103633219 103844170 103844175 100267049 7463406 11443944 123052565 123044702 123425921 107887153 121214653 111213864 106400558 66055334 8077499 102586115 102630106 100826734 142173220 142173222
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