ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
sly-u.5	GH3-12	jasmonoyl--L-amino acid synthetase JAR6
sly-r.6	GH3-12	jasmonoyl--L-amino acid synthetase JAR6
sly-u.5	GH3-1	jasmonoyl--L-amino acid synthetase JAR6
sly-u.5	GH3-21	jasmonoyl--L-amino acid synthetase JAR6
sly-u.5	GH3-5	putative indole-3-acetic acid-amido synthetase GH3.5
sot-r.1	102603612	probable indole-3-acetic acid-amido synthetase GH3.5
sot-r.1	102600861	probable indole-3-acetic acid-amido synthetase GH3.5
sot-r.1	102578750	probable indole-3-acetic acid-amido synthetase GH3.5
nta-r.1	107761031	jasmonoyl--L-amino acid synthetase JAR6
nta-r.1	107806520	jasmonoyl--L-amino acid synthetase JAR4
nta-r.1	107769747	jasmonoyl--L-amino acid synthetase JAR6
ath-u.5	JAR1	Auxin-responsive GH3 family protein
gma-u.5	100794598	jasmonoyl--L-amino acid synthetase JAR4
gma-u.5	100777944	jasmonoyl--L-amino acid synthetase JAR4
gma-u.5	100813492	jasmonoyl--L-amino acid synthetase JAR4
bra-r.6	103866475	jasmonoyl--L-amino acid synthetase JAR1
bra-r.6	103858212	jasmonoyl--L-amino acid synthetase JAR1
bra-r.6	103866275	jasmonoyl--L-amino acid synthetase JAR1
vvi-u.5	100251627	jasmonoyl--L-amino acid synthetase JAR4
ppo-u.5	7494139	jasmonoyl--L-amino acid synthetase JAR4
ppo-u.5	7497237	jasmonoyl--L-amino acid synthetase JAR6
mtr-u.5	25500734	jasmonoyl--L-amino acid synthetase JAR6
mtr-u.5	11431770	jasmonoyl--L-amino acid synthetase JAR4
mtr-u.5	25500738	jasmonoyl--L-amino acid synthetase JAR6
ghi-r.1	107909788	jasmonoyl--L-amino acid synthetase JAR4
ghi-r.1	107923052	jasmonoyl--L-amino acid synthetase JAR4
ghi-r.1	107923326	jasmonoyl--L-amino acid synthetase JAR4
bna-r.1	106392009	jasmonoyl--L-amino acid synthetase JAR1-like
bna-r.1	106453225	jasmonoyl--L-amino acid synthetase JAR1-like
bna-r.1	106446159	jasmonoyl--L-amino acid synthetase JAR1
cit-r.1	127898602	jasmonoyl--L-amino acid synthetase JAR4-like
cit-r.1	102611440	jasmonoyl--L-amino acid synthetase JAR4
osa-u.5	4324650	jasmonoyl--L-amino acid synthetase GH3.3-like
osa-u.5	107275638	probable indole-3-acetic acid-amido synthetase GH3.12
osa-u.5	4339756	jasmonic acid-amido synthetase JAR1-like
zma-u.5	100280367	uncharacterized LOC100280367
zma-u.5	103649563	probable indole-3-acetic acid-amido synthetase GH3.12
zma-u.5	100193303	uncharacterized LOC100193303
tae-r.2	123069272	jasmonoyl--L-amino acid synthetase GH3.3
tae-r.2	123077792	jasmonoyl--L-amino acid synthetase GH3.3
tae-r.2	123060705	jasmonoyl--L-amino acid synthetase GH3.3
hvu-r.1	123443188	jasmonoyl--L-amino acid synthetase GH3.3-like
hvu-r.1	123452116	jasmonoyl--L-amino acid synthetase GH3.5
sbi-r.1	8079493	jasmonic acid-amido synthetase JAR2
sbi-r.1	8071821	jasmonic acid-amido synthetase JAR2
bdi-r.1	100844662	jasmonic acid-amido synthetase JAR2
bdi-r.1	100821807	jasmonic acid-amido synthetase JAR1

Top 50 coexpressed genes to GH3-12 (sly-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to GH3-12 (sly-u.5 coexpression data)

CoexMap"101262663"

[Cytoscape]

Annotation

functional annotation

KEGG

sly04075 [list] [network] Plant hormone signal transduction (437 genes)

GO BP

GO CC

GO:0005737 [list] [network] cytoplasm

(5127 genes)

IEA

GO MF

GO:0016881 [list] [network] acid-amino acid ligase activity

(35 genes)

IEA

Protein

XP_004248077.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 5, cyto_nucl 4, cyto 3

(predict for XP_004248077.1)

Subcellular
localization
TargetP

other 9

(predict for XP_004248077.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	sly-u.5 for GH3-12	sly-r.6 for GH3-12	sly-u.5 for GH3-1	sly-u.5 for GH3-21	sly-u.5 for GH3-5	sot-r.1 for 102603612	sot-r.1 for 102600861	sot-r.1 for 102578750	nta-r.1 for 107761031	nta-r.1 for 107806520	nta-r.1 for 107769747	ath-u.5 for JAR1	gma-u.5 for 100794598	gma-u.5 for 100777944	gma-u.5 for 100813492	bra-r.6 for 103866475	bra-r.6 for 103858212	bra-r.6 for 103866275	vvi-u.5 for 100251627	ppo-u.5 for 7494139	ppo-u.5 for 7497237	mtr-u.5 for 25500734	mtr-u.5 for 11431770	mtr-u.5 for 25500738	ghi-r.1 for 107909788	ghi-r.1 for 107923052	ghi-r.1 for 107923326	bna-r.1 for 106392009	bna-r.1 for 106453225	bna-r.1 for 106446159	cit-r.1 for 127898602	cit-r.1 for 102611440	osa-u.5 for 4324650	osa-u.5 for 107275638	osa-u.5 for 4339756	zma-u.5 for 100280367	zma-u.5 for 103649563	zma-u.5 for 100193303	tae-r.2 for 123069272	tae-r.2 for 123077792	tae-r.2 for 123060705	hvu-r.1 for 123443188	hvu-r.1 for 123452116	sbi-r.1 for 8079493	sbi-r.1 for 8071821	bdi-r.1 for 100844662	bdi-r.1 for 100821807

Ortholog

Ortholog ID: 1796

Species

sly

sot

nta

ath

gma

bra

vvi

ppo

mtr

ghi

bna

cit

osa

zma

tae

hvu

sbi

bdi

Symbol

GH3-12

GH3-5

GH3-13

JAR1

Function^*

jasmonoyl--L-amino acid synthetase JAR6

putative indole-3-acetic acid-amido synthetase GH3.5

jasmonoyl--L-amino acid synthetase JAR6

probable indole-3-acetic acid-amido synthetase GH3.5